Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1011
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    29   3.4  
At1g28120.1 68414.m03445 expressed protein                             29   3.4  

>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
           domain-containing protein contains Pfam profiles
           PF02170: PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 430 LQILVLDVIDRACVKFSGRCPALVLC-LTEIHE 525
           L+ L+  VID A     G CP LVLC +T  H+
Sbjct: 819 LEELLRSVIDEASHNHGGACPTLVLCAMTGKHD 851


>At1g28120.1 68414.m03445 expressed protein
          Length = 306

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = +1

Query: 49  KMPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAY----NITGQNNVGTKEFCFWYLPQ 216
           K+P++  + P+        +G  +L +KIK+    Y       G  N   + F F YL  
Sbjct: 45  KVPYVGDKEPLSSLAAEYQSGSPILLEKIKILDSQYIGIRRTRGDGNCFFRSFMFSYLEH 104

Query: 217 IQYKNPDVQIVTLKI 261
           I       ++  +K+
Sbjct: 105 ILESQDRAEVDRIKV 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,561,584
Number of Sequences: 28952
Number of extensions: 308316
Number of successful extensions: 725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)