Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1010
         (457 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    33   0.001
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    33   0.001
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   7.2  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   7.2  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 33.1 bits (72), Expect = 0.001
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 380 PGPCSRAPSGEMAV--SXPGTLGSWTPRR-*SLCPYARLLHEAKFR 252
           PGP S+AP+ + ++  S P  +G W PRR  S  P AR   +A  R
Sbjct: 95  PGPLSQAPASQQSLDASDPDAMGKWCPRREWSSPPDARAASDAARR 140


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 33.1 bits (72), Expect = 0.001
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 380 PGPCSRAPSGEMAV--SXPGTLGSWTPRR-*SLCPYARLLHEAKFR 252
           PGP S+AP+ + ++  S P  +G W PRR  S  P AR   +A  R
Sbjct: 251 PGPLSQAPASQQSLDASDPDAMGKWCPRREWSSPPDARAASDAARR 296


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
          optomotor-blind-like protein protein.
          Length = 143

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 79 RFYEEFKMKTP*LDSKFAYVL 17
          R +  FK++   LD K  Y+L
Sbjct: 1  RMFPAFKVRVSGLDKKSKYIL 21


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
          optomotor-blind-like protein protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 79 RFYEEFKMKTP*LDSKFAYVL 17
          R +  FK++   LD K  Y+L
Sbjct: 1  RMFPAFKVRVSGLDKKSKYIL 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,018
Number of Sequences: 336
Number of extensions: 1992
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)