Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1010
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    31   0.11 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   1.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   1.4  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   3.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   5.5  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.3  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    25   7.3  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -1

Query: 271 FTKQSFVIK*SFAP-----IEPWGIKPMAATVFIAKSSMAYRPITKVKPDQ 134
           + ++SF I+ S  P     + PWG + + AT+ I +S      I  V PDQ
Sbjct: 147 YGRRSFRIEESVQPDTMSCLSPWGTERLTATINILRSDKTAEEIRSVPPDQ 197


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 223 PWGIKPMAATVFIAKSSMAYRPITKVKPD 137
           PW +K         KS+  Y+PI   KPD
Sbjct: 498 PWTLKHKGGDAKATKSASKYKPINYPKPD 526


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 208 PMAATVFIAKSSMAYRPITKVKPDQTRYDNDER 110
           P  A  FI +   +Y  I + +PD+  YD+ ER
Sbjct: 47  PSFANPFIHEQDDSYSDILEEEPDEDAYDSPER 79


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 150 FVMGRYAMLLLAINTVAAMGFIPHGSIGAKDHL 248
           F+  R  +L+ AI+T   +GFI +GSI   +H+
Sbjct: 348 FLKNRGIVLIAAISTTM-IGFIVYGSIDIMNHI 379


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 315 LDAASLKSLPIRSTTSRSKVSLLNDP 238
           L AAS KSLP  ST S+   S    P
Sbjct: 300 LIAASKKSLPSNSTPSKPNTSFFETP 325


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 203 HGLYPPWFYWGKGSFNNETLLREVVER 283
           H  Y P F  G G  N+  L + +VER
Sbjct: 808 HCCYEPSFISGLGMHNSSILQKSIVER 834


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 214 IKPMAATVFIAKSSMAY-RPITKVKPDQTRYDNDERHRQ 101
           I+ +A + + +++S  Y R I  +KPD  +YD D++  +
Sbjct: 100 IQNVAFSDYHSQASKDYNRGIRDLKPDYEKYDKDKKEEK 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,889
Number of Sequences: 5004
Number of extensions: 33080
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)