Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1010
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0646 - 19194261-19195730                                         30   0.77 
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792...    30   1.0  
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478...    29   2.3  
05_03_0087 + 8286700-8288088                                           28   3.1  
06_01_1068 + 8715714-8716799,8716899-8717159                           27   5.4  
05_03_0643 - 16515183-16515758,16516502-16516532,16516717-165167...    27   5.4  
07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987...    27   7.2  
01_01_0357 - 2816650-2817897                                           27   9.5  

>09_04_0646 - 19194261-19195730
          Length = 489

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 316 AGRRVVEVFAHTLDYFTKQSFVIK*SFAPIEPWGIKPMAATVFIAKSSMAYRPIT 152
           A ++  E  AHT ++    S      F    PWG +P  A  F AKS ++  PIT
Sbjct: 271 ATKKAGEAIAHTYNHIYGLSITGLRFFTVYGPWG-RPDMAYFFFAKSIVSGEPIT 324


>09_04_0272 -
           16278136-16278289,16278873-16278970,16279090-16279230,
           16279701-16279865,16279941-16280117,16280330-16280510,
           16280784-16280829,16281178-16281241,16281331-16281353,
           16281964-16282036,16282410-16282541,16283343-16283429,
           16283488-16283700
          Length = 517

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 194 RRSHGLYPPWFYWGKGSFNNETLLREVVERMGKDFNDAASSYLEFP 331
           RRS    PPW +WG  +   E   RE  E M   + DAA +++  P
Sbjct: 58  RRSIWFGPPWHFWGVIAEVVEASAREYEEGMRACY-DAAKTWMAIP 102


>11_01_0600 -
           4780579-4780839,4781256-4781324,4781535-4781598,
           4781791-4781919,4782234-4782541
          Length = 276

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 181 KSSMAYRPITKVKPDQTRYDNDERH 107
           K+ M    I+ VKPD TR+D DE H
Sbjct: 139 KNRMIPDRISFVKPDDTRHDTDEDH 163


>05_03_0087 + 8286700-8288088
          Length = 462

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 301 RRGVQLPRVPGQLTAISPDGAREQGPGERAARLRLVDRXEPXPQSVRPR 447
           RR   + R  GQ+  ++P G+   G G+ A  +            VRPR
Sbjct: 19  RREESMERTEGQVVVLTPSGSTGNGDGDGALVVSTTSSDRNRTPRVRPR 67


>06_01_1068 + 8715714-8716799,8716899-8717159
          Length = 448

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 253 RNFAS*SSRAYGQRLQRRGVQLPRVPGQLTAISPDGAREQG 375
           R+ A+ S+ A+GQ L RR V +P         SP+  +++G
Sbjct: 97  RSHAAKSAAAFGQLLSRRLVVVPEAAAGSGGDSPEERKDEG 137


>05_03_0643 -
           16515183-16515758,16516502-16516532,16516717-16516756,
           16517183-16517243
          Length = 235

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 181 KSSMAYRPITKVKPDQ-TRYDNDERHRQVHTC 89
           + S A   I  V P + TRYD D++H+ V  C
Sbjct: 53  EKSSAMSNIAPVAPTRITRYDKDDKHKPVIVC 84


>07_03_0408 -
           17798033-17798181,17798349-17798616,17798707-17798797,
           17800458-17800585,17800760-17800891
          Length = 255

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 248 NNETLLREVVERMGKDFNDAASSYLEFPXS*PPSRL---MAHASKDLENEQLDYDS 406
           + + L++E+    G D +    ++L FP S   +R+   +AH   D + E+LDYD+
Sbjct: 161 SGKQLVKEICPTCG-DHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDT 215


>01_01_0357 - 2816650-2817897
          Length = 415

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 328 PGQLTAISPDGAREQGPGERAARLRLVDRXEPXPQSVRP 444
           P QL   +PDGA    P       RLV   +P P+ ++P
Sbjct: 83  PLQLRRRAPDGAPRHPPDAAFPLQRLVRGDQPPPRPLQP 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,136,417
Number of Sequences: 37544
Number of extensions: 248404
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)