Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1010
(457 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16) 27 5.6
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14) 27 7.4
SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_20803| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-06) 27 7.4
SB_20682| Best HMM Match : HWE_HK (HMM E-Value=0.35) 27 7.4
SB_17744| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_773| Best HMM Match : NblA (HMM E-Value=1.1) 27 7.4
SB_651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)
Length = 460
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 230 WGKGSFNNETLLREVVERMGKDFNDAASSYL 322
W G N L E +++ GKDFND +L
Sbjct: 263 WSAGEAN---LFEEALQKYGKDFNDIQKDFL 290
>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 230 WGKGSFNNETLLREVVERMGKDFNDAASSYL 322
W G N L E +++ GKDFND +L
Sbjct: 274 WSAGEAN---LFEEALQKYGKDFNDIQKDFL 301
>SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14)
Length = 404
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 NETLLREVVERMGKDFNDAASSYLEFPXS*PPSRLMAHASKDLENEQL-DYDS 406
N L++ R+ +F D S + FP P+R+ +H + L+N + D+DS
Sbjct: 97 NLDLMKHDTHRLTAEFLDIMYSKMFFPLITRPTRITSHTATLLDNIIINDHDS 149
>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 895
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 NETLLREVVERMGKDFNDAASSYLEFPXS*PPSRLMAHASKDLENEQL-DYDS 406
N L++ R+ +F D S + FP P+R+ +H + L+N + D+DS
Sbjct: 405 NLDLMKHDTHRLTAEFLDIMYSKMFFPLITRPTRITSHTATLLDNIFINDHDS 457
>SB_20803| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-06)
Length = 563
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 NETLLREVVERMGKDFNDAASSYLEFPXS*PPSRLMAHASKDLENEQL-DYDS 406
N L++ R+ +F D S + FP P+R+ +H + L+N + D+DS
Sbjct: 442 NLDLMKHDTHRLTAEFLDIMYSKMFFPLITRPTRITSHTATLLDNIFINDHDS 494
>SB_20682| Best HMM Match : HWE_HK (HMM E-Value=0.35)
Length = 450
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 NETLLREVVERMGKDFNDAASSYLEFPXS*PPSRLMAHASKDLENEQL-DYDS 406
N L++ R+ +F D S + FP P+R+ +H + L+N + D+DS
Sbjct: 268 NLDLMKHDTHRLTAEFLDIMYSKMFFPLITRPTRITSHTATLLDNIFINDHDS 320
>SB_17744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 NETLLREVVERMGKDFNDAASSYLEFPXS*PPSRLMAHASKDLENEQL-DYDS 406
N L++ R+ +F D S + FP P+R+ +H + L+N + D+DS
Sbjct: 254 NLDLMKHDTHRLTAEFLDIMYSKMFFPLITRPTRITSHTATLLDNIFINDHDS 306
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 50 CFHFKFLIKTLKSACMY 100
CFH FL+ +L SAC Y
Sbjct: 499 CFHADFLLLSLHSACSY 515
>SB_773| Best HMM Match : NblA (HMM E-Value=1.1)
Length = 256
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 NETLLREVVERMGKDFNDAASSYLEFPXS*PPSRLMAHASKDLENEQL-DYDS 406
N L++ R+ +F D S + FP P+R+ +H + L+N + D+DS
Sbjct: 199 NLDLMKHDTHRLTAEFLDIMYSKMFFPLITRPTRITSHTATLLDNIFINDHDS 251
>SB_651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 NETLLREVVERMGKDFNDAASSYLEFPXS*PPSRLMAHASKDLENEQL-DYDS 406
N L++ R+ +F D S + FP P+R+ +H + L+N + D+DS
Sbjct: 152 NLDLMKHDTHRLTAEFLDIMYSKMFFPLITRPTRITSHTATLLDNIFINDHDS 204
>SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = -1
Query: 220 WGIKPMAATVFIAKSSMAYRPITKV----KPDQ--TRYDNDERHRQV 98
W ++P A +F+A S+ Y+P + KP + Y + HR++
Sbjct: 611 WFLQPQEAQLFLATESLKYKPFQRTPLPFKPRKLSRNYSKQDLHRRM 657
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,613
Number of Sequences: 59808
Number of extensions: 256449
Number of successful extensions: 748
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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