Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1010
         (457 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04270-1|AAA62473.1| 1159|Homo sapiens putative potassium channe...    29   5.7  
DQ784808-1|ABQ01243.1| 1159|Homo sapiens potassium voltage-gated...    29   5.7  
DQ525913-1|ABF71886.1| 1159|Homo sapiens voltage-gated potassium...    29   5.7  
BC004311-1|AAH04311.2|  444|Homo sapiens KCNH2 protein protein.        29   5.7  
AJ512214-1|CAD54447.1|  819|Homo sapiens potassium channel 1b pr...    29   5.7  
AJ010538-1|CAA09232.1| 1133|Homo sapiens ether-a-go-go-related p...    29   5.7  
AF363636-1|AAL37559.1| 1159|Homo sapiens ether-a-go-go-related K...    29   5.7  
AB009071-1|BAA37096.1| 1159|Homo sapiens HERG protein.                 29   5.7  

>U04270-1|AAA62473.1| 1159|Homo sapiens putative potassium channel
            subunit protein.
          Length = 1159

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 349  SPDGAREQGPGERAARLRLVDRXEPXPQSVRP 444
            SP+ + ++GPG  ++ LRLV    P P    P
Sbjct: 937  SPESSEDEGPGRSSSPLRLVPFSSPRPPGEPP 968


>DQ784808-1|ABQ01243.1| 1159|Homo sapiens potassium voltage-gated
            channel subfamily H member 2 protein.
          Length = 1159

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 349  SPDGAREQGPGERAARLRLVDRXEPXPQSVRP 444
            SP+ + ++GPG  ++ LRLV    P P    P
Sbjct: 937  SPESSEDEGPGRSSSPLRLVPFSSPRPPGEPP 968


>DQ525913-1|ABF71886.1| 1159|Homo sapiens voltage-gated potassium
            channel KV11.1 transcript variant 1 protein.
          Length = 1159

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 349  SPDGAREQGPGERAARLRLVDRXEPXPQSVRP 444
            SP+ + ++GPG  ++ LRLV    P P    P
Sbjct: 937  SPESSEDEGPGRSSSPLRLVPFSSPRPPGEPP 968


>BC004311-1|AAH04311.2|  444|Homo sapiens KCNH2 protein protein.
          Length = 444

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 349 SPDGAREQGPGERAARLRLVDRXEPXPQSVRP 444
           SP+ + ++GPG  ++ LRLV    P P    P
Sbjct: 222 SPESSEDEGPGRSSSPLRLVPFSSPRPPGEPP 253


>AJ512214-1|CAD54447.1|  819|Homo sapiens potassium channel 1b
           protein protein.
          Length = 819

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 349 SPDGAREQGPGERAARLRLVDRXEPXPQSVRP 444
           SP+ + ++GPG  ++ LRLV    P P    P
Sbjct: 597 SPESSEDEGPGRSSSPLRLVPFSSPRPPGEPP 628


>AJ010538-1|CAA09232.1| 1133|Homo sapiens ether-a-go-go-related
            protein protein.
          Length = 1133

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 349  SPDGAREQGPGERAARLRLVDRXEPXPQSVRP 444
            SP+ + ++GPG  ++ LRLV    P P    P
Sbjct: 911  SPESSEDEGPGRSSSPLRLVPFSSPRPPGEPP 942


>AF363636-1|AAL37559.1| 1159|Homo sapiens ether-a-go-go-related K+
            channel protein protein.
          Length = 1159

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 349  SPDGAREQGPGERAARLRLVDRXEPXPQSVRP 444
            SP+ + ++GPG  ++ LRLV    P P    P
Sbjct: 937  SPESSEDEGPGRSSSPLRLVPFSSPRPPGEPP 968


>AB009071-1|BAA37096.1| 1159|Homo sapiens HERG protein.
          Length = 1159

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 349  SPDGAREQGPGERAARLRLVDRXEPXPQSVRP 444
            SP+ + ++GPG  ++ LRLV    P P    P
Sbjct: 937  SPESSEDEGPGRSSSPLRLVPFSSPRPPGEPP 968


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,111,257
Number of Sequences: 237096
Number of extensions: 1295955
Number of successful extensions: 2590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2585
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)