Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1010
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +2

Query: 236 KGSFNN----ETLLREVVERMGKDFNDAASSYL 322
           KGSF      E +  E  E+ GK+++ A  +YL
Sbjct: 518 KGSFVTQYVGEVITNEEAEKRGKEYDAAGRTYL 550


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 297  KSLPIRSTTSRSKVSLLNDPL 235
            KSLP R  +SRS +  L  P+
Sbjct: 1836 KSLPRRGRSSRSSLRTLLPPI 1856


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 297  KSLPIRSTTSRSKVSLLNDPL 235
            KSLP R  +SRS +  L  P+
Sbjct: 1832 KSLPRRGRSSRSSLRTLLPPI 1852


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 94  YVPGGGAHHYHSE 132
           YV    AHH+H +
Sbjct: 91  YVSAAAAHHHHQQ 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,994
Number of Sequences: 438
Number of extensions: 2760
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)