Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1010
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02890.1 68414.m00256 AAA-type ATPase family protein contains...    30   0.85 
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    27   6.0  

>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           mitochondrial sorting protein 1 (MSP1) (TAT-binding
           homolog 4) (Swiss-Prot:P28737) [Saccharomyces
           cerevisiae]
          Length = 1252

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 283 YGQRLQRRGVQLPRVPGQLTAISPDGAREQGPGERAARLRLVDRXE 420
           +G RLQ R  ++P+   Q+T + P+    Q P + A+ +   D+ E
Sbjct: 780 FGGRLQDRNTEMPKAVKQITRLFPNKVTIQLPEDEASLVDWKDKLE 825


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P46100
            Transcriptional regulator ATRX {Homo sapiens}; contains
            PFam profiles PF00271: Helicase conserved C-terminal
            domain, PF00176: SNF2 family N-terminal domain;
            non-consensus GC donor splice site at exon boundary 28614
          Length = 1457

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 334  QLTAISPDGAREQGPGERAARLRLVDR-XEPXPQSVR 441
            +LT  S DG R  G  E + R +LVDR  EP  + V+
Sbjct: 1140 RLTLTSLDGCRIDGKTESSERQKLVDRFNEPDNKRVK 1176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,301,324
Number of Sequences: 28952
Number of extensions: 182125
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)