Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1009
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    26   5.9  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    26   5.9  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   7.8  

>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 618 VSIKNAHGLAPYCDVIAVKPEKIGKVSKKGPY 523
           + +K A   APYCD + V       ++KKG Y
Sbjct: 88  IMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKY 119


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 375 IHNLNPCLIYHDQYSTLQGNYIIDVY 298
           + N+    +YHDQ+S  Q + ++ V+
Sbjct: 769 LQNVQMLFVYHDQFSRAQEDELVSVF 794


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 420 PDSVAIFK*VGFF*NIHNLNPCLIYHD-QYSTLQGNYIIDVYGSLK 286
           P SV       F+  +     C I HD     +Q +Y +DVYG+++
Sbjct: 225 PLSVECIFCTNFYEPVFCFEHCKIVHDWDIKKIQKDYSLDVYGAIR 270


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 39   FNDYLLAKLGSYLGTTSDDVPFGVQDC 119
            F  Y+ A L  +LG T+D VP  ++ C
Sbjct: 1078 FAYYIKASLLEHLGETTDSVPSAIRLC 1104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,702
Number of Sequences: 5004
Number of extensions: 51840
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)