Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1009
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr...    29   2.4  

>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
           protein C53B4.4e protein.
          Length = 1544

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 233 DTFFLLLSIFFYRSLDSSRSLTCTFLFET 147
           DTFF + SIF   S ++ R L C   FE+
Sbjct: 27  DTFFSVFSIFGAHSRENKRDLLCLHFFES 55


>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
           protein C53B4.4b protein.
          Length = 1586

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 233 DTFFLLLSIFFYRSLDSSRSLTCTFLFET 147
           DTFF + SIF   S ++ R L C   FE+
Sbjct: 27  DTFFSVFSIFGAHSRENKRDLLCLHFFES 55


>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
           protein C53B4.4a protein.
          Length = 1584

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 233 DTFFLLLSIFFYRSLDSSRSLTCTFLFET 147
           DTFF + SIF   S ++ R L C   FE+
Sbjct: 27  DTFFSVFSIFGAHSRENKRDLLCLHFFES 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,641,746
Number of Sequences: 27780
Number of extensions: 290907
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)