Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1009
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   2.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 533 FLLTLPIFSGLTAMTSQYGASPC---AFLIETHHVTYL 637
           F  TLP+ S LTAM    G   C   A L+E   V Y+
Sbjct: 350 FRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYV 387


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 533 FLLTLPIFSGLTAMTSQYGASPC---AFLIETHHVTYL 637
           F  TLP+ S LTAM    G   C   A L+E   V Y+
Sbjct: 319 FRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYV 356


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 533 FLLTLPIFSGLTAMTSQYGASPC---AFLIETHHVTYL 637
           F  TLP+ S LTAM    G   C   A L+E   V Y+
Sbjct: 370 FRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYV 407


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 533 FLLTLPIFSGLTAMTSQYGASPC---AFLIETHHVTYL 637
           F  TLP+ S LTAM    G   C   A L+E   V Y+
Sbjct: 319 FRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYV 356


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 364 KSMFNLPRPVLNITRKLYYRC 302
           K++ +LPR + + T+KL+ +C
Sbjct: 79  KALRHLPRSMQDSTKKLFNKC 99


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 260 NHEDY*YVCFNEPYTSII*FPCNVEYWSW*IKHGFR 367
           NH+   Y  +  P  +II  P N+E+    +K G++
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKLGWK 222


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 422 GPTVLQFLNRWDFFKIYI 369
           G  VL F   W+ FK++I
Sbjct: 115 GLAVLPFSATWEVFKVWI 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,960
Number of Sequences: 438
Number of extensions: 3552
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)