Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1007
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   3.8  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    29   5.1  
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435...    28   6.7  
09_01_0061 + 948663-948708,949638-949993                               28   6.7  
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    28   8.8  
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559     28   8.8  
03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621     28   8.8  

>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +1

Query: 4   EDFYR--VRRLRCLGSGPHR*AEGELEETQSR-LSLRDE 111
           EDF+R  ++RL+ LG  P     GE+EE ++R +S+RD+
Sbjct: 103 EDFFRKSIQRLKTLG--PRHNIAGEIEELKARVISVRDQ 139


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = +1

Query: 124 IGEQTEDRRL*D*KRTIEEVCSMYADQITADDQGREIQEGRRSGKVPNAEDKL------- 282
           +GE  E+R++    R  E+   +  +++    +  E+QE   + K    ++K+       
Sbjct: 236 VGEDPEERQMVSLNRLFEKHRDVSLNRLLEKHRDEEMQESCSTDKEGEEDEKIDTLSFEQ 295

Query: 283 KVEKLIDACLANKGNSPHQTAWNYVKC 363
            + K+    L N  N+P+Q +   V+C
Sbjct: 296 SILKITSMKLGNLWNNPNQLSEEMVRC 322


>11_06_0066 -
           19741883-19742263,19743001-19743231,19743378-19743530,
           19743667-19743726,19743806-19743874,19744639-19744719,
           19744818-19744920,19745392-19745534,19745621-19745683,
           19745803-19745870,19745974-19746055,19746147-19746260,
           19746362-19746570,19746647-19746818
          Length = 642

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 637 IKRDKQSYDEHRRKLNFGSRSNMLQQLNKIYRTDI 533
           +KR KQ  +E R+KL  GS S +L+Q+    R D+
Sbjct: 353 LKRQKQEIEELRKKLQ-GSHSEVLEQVILKQRNDM 386


>09_01_0061 + 948663-948708,949638-949993
          Length = 133

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 220 QGREIQEGRRSGKVPNAEDKLKVEKLIDACLANKGNSPHQ 339
           +GR I+EGRR G  P  E K +   + D C+ +  +  H+
Sbjct: 64  EGRSIKEGRRPGH-PEEELKAEDRGIEDLCVIHVSSKDHR 102


>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +2

Query: 26  VCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 205
           VC+V+      +  E +KK  ++  SE +    LV  L   D+   N  L +   C  I 
Sbjct: 46  VCIVIGYCEGGDMSEAIKKANSNYFSEERLCMWLVQLLMALDYLHVNHILHRDVKCSNI- 104

Query: 206 SQLMTKDGKFK-KDVALVKCL 265
              +TKD   +  D  L K L
Sbjct: 105 --FLTKDQNIRLGDFGLAKVL 123


>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
          Length = 789

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 622 QSYDEHRRKLNFGSRSNMLQQLNKIYRTD 536
           +SY++ +R L+FGS S+  +  NK +R++
Sbjct: 720 RSYEKKKRSLSFGSTSSSHEHKNKRHRSN 748


>03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621
          Length = 140

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 500 CNILRYNHDIV*INTSELFNTNEVWNGWVGLCVYKK 393
           C I    HD+  I++S  F    +   W G+C++KK
Sbjct: 99  CYIYESKHDL--ISSSNKFGAKFLMGTWCGVCMWKK 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,949
Number of Sequences: 37544
Number of extensions: 348685
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)