Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1007
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)                31   0.97 
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          29   3.9  
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 28   9.0  
SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)             28   9.0  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 271 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 399
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)
          Length = 511

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -3

Query: 631 RDKQSYDEHRRKLNFGSRSNMLQQLNKIYRTDID*S*NNNTYKIAIFSDIIMISSR*TRP 452
           RD+   D    K+     SN L+++N   +T +    NNN  ++   S +     R T  
Sbjct: 344 RDEFVKDFEEIKVKMDEHSNELEEINDTLKTVLHMLQNNNQEEVRSVSSVTADDLRQTMS 403

Query: 451 SYLTLMRYGTVGL 413
           S L++ R   +GL
Sbjct: 404 SILSIPRQSIMGL 416


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 176 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 45
           S +  +S S  SSVC  ++H+LS+ R   +C S     A+   P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 176  KKYALCMLIKSQLMTKDGKFKKDVALVKCLMLK 274
            ++ ALC +I+++L+TKDG+       + C  L+
Sbjct: 1175 RRNALCEVIENRLVTKDGRSLSQAGRILCYRLR 1207


>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 184 CSMYADQITADDQGREIQEGRRSGKVPNAEDKLKVEKLIDACLANKG 324
           C  Y  +    D  + I EG R  + PN E  L  + L+     NKG
Sbjct: 51  CGFYYTEEQVLDIRKAIPEGTRVNEFPNCEHDLITKPLVSGSEKNKG 97


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -2

Query: 578  IEYVTTTKQNLSNRYRLKLE**HLQDCNILRYNHDIV*INTSELFNTNEVWNGWVGLCV 402
            +EY     QN+  RY  K+   HL+ C I +  ++      S+++N     + ++ LC+
Sbjct: 1051 LEYGAKVPQNIRQRYLDKIIDEHLRLCRIEKVAYEKALEEESQIYNRATRRHMYINLCI 1109


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 124 LFISFRLG--ETVGSVFLQVLLLLICEGLSQDNADDEHDK 11
           LF++F  G  E VG  F+     L CE    D  DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCTL-CEIAEDDENDDDHER 343


>SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)
          Length = 283

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +1

Query: 211 ADDQGREIQEGRRSGKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHA 390
           A+ +G EI   +    + +A +K    K++D  L ++      TA +YV+ YHE   KH+
Sbjct: 175 AEKEGSEIVGYKTFQDMADALEK----KIVDGILIDR-----YTAGSYVRHYHENKLKHS 225

Query: 391 LFL*THNPTQPFHTSLVLNSS 453
           L   +H          V++S+
Sbjct: 226 LISASHVQISGQQIGFVISSN 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,178,765
Number of Sequences: 59808
Number of extensions: 434373
Number of successful extensions: 1201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)