Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1007
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 0.64
Z75526-4|CAA99770.1| 360|Caenorhabditis elegans Hypothetical pr... 30 2.0
EF409995-1|ABN58742.1| 410|Caenorhabditis elegans reduced folat... 30 2.0
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 29 3.4
Z54307-5|CAD56575.1| 513|Caenorhabditis elegans Hypothetical pr... 29 4.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 6.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.0
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 7.9
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 7.9
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 28 7.9
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 7.9
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 28 7.9
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 7.9
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 28 7.9
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 28 7.9
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 457 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 344
RPS LT YG+ GL+ + K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197
>Z75526-4|CAA99770.1| 360|Caenorhabditis elegans Hypothetical
protein C06H2.4 protein.
Length = 360
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = -1
Query: 336 VRAVAFVGQASVNQLLYFQFVFSI---RHFTRATSFLNFPSLV 217
+ V+F G AS ++ Y+ +++SI +H+ RATS++ +L+
Sbjct: 99 IMQVSF-GVASAAEIAYYSYIYSIVDRKHYKRATSYIRAAALM 140
>EF409995-1|ABN58742.1| 410|Caenorhabditis elegans reduced folate
carrier protein.
Length = 410
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = -1
Query: 336 VRAVAFVGQASVNQLLYFQFVFSI---RHFTRATSFLNFPSLV 217
+ V+F G AS ++ Y+ +++SI +H+ RATS++ +L+
Sbjct: 99 IMQVSF-GVASAAEIAYYSYIYSIVDRKHYKRATSYIRAAALM 140
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 196 ADQITADDQGREIQEGRRS--GKVPNAEDKLKVEKLIDA 306
A Q GR+ Q G++S K PN + K K+EK +DA
Sbjct: 558 AQQRAKQKDGRQKQYGKKSMGPKPPNGKPKEKIEKKLDA 596
>Z54307-5|CAD56575.1| 513|Caenorhabditis elegans Hypothetical
protein F14F11.1g protein.
Length = 513
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 654 RNHQETSNEINKAMTNTEEN*ILVLDRICYNN*TKFIEQI*I-KVRIITPTRLQYSPI*S 478
R +E SNE + + +TE IL + I + + +++I ++ +TP Y P+ +
Sbjct: 7 RRARENSNETSLSWMDTEHRVILNVGGIRHETYSHVLKKIPATRLSRLTPNLANYDPVLN 66
Query: 477 *YRLDKH 457
Y D+H
Sbjct: 67 EYFFDRH 73
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 41 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 220
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324
Query: 221 KDGKFKKD 244
KD K K++
Sbjct: 7325 KDDKLKQE 7332
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 41 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 220
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 221 KDGKFKKD 244
KD K K++
Sbjct: 7345 KDDKLKQE 7352
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 41 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 220
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 221 KDGKFKKD 244
KD K K++
Sbjct: 7345 KDDKLKQE 7352
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 306 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 428
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 306 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 428
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 92 DCLSETKADEQLVNKLKTGDFKTENEPLK 178
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 240 FLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 67
F + + C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 6 FFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 92 DCLSETKADEQLVNKLKTGDFKTENEPLK 178
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 14 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 166
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 306 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 428
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 26 VCVVLAQALTDEQKENLKKHRADCLSETKA--DEQLVNKLKTGDFKTENE 169
V + LTD Q++NLK ++ ++ET + L N + +G F E E
Sbjct: 330 VVTTYEEKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 14 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 166
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,960,093
Number of Sequences: 27780
Number of extensions: 339494
Number of successful extensions: 1114
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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