Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1007
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    32   0.45 
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    31   0.60 
At4g02710.1 68417.m00366 kinase interacting family protein simil...    29   4.2  
At5g64710.2 68418.m08135 expressed protein contains Pfam profile...    28   5.6  
At5g64710.1 68418.m08134 expressed protein contains Pfam profile...    28   5.6  
At2g34780.1 68415.m04270 expressed protein                             28   5.6  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    27   9.8  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   9.8  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 56  DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 232
           D  K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 391 ERASGLSRGSISHNSRLFGEGCCLCWPGKRQS 296
           ERA+G S G    +SR     C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 412 DYVFTRKERASGLSRGSISHNSRLFGEGCCL 320
           DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 716

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +2

Query: 32  VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 202
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 237 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 296

Query: 203 KSQLMTKDGKFKK 241
            S    KDG  KK
Sbjct: 297 VSSFEEKDGFLKK 309


>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 841

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +2

Query: 32  VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 202
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 362 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 421

Query: 203 KSQLMTKDGKFKK 241
            S    KDG  KK
Sbjct: 422 VSSFEEKDGFLKK 434


>At2g34780.1 68415.m04270 expressed protein
          Length = 1297

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 634 KRDKQSYDEHRRKLNFGSRSNMLQQLNKIYRTDID 530
           +R+ Q  +  R KL FGS +N +  L++ + TD++
Sbjct: 401 RREFQCEELGRLKLEFGSLTNRMNLLDEYFSTDVE 435


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 303 RLPGQQRQQPSPNSLELCEMLPRERPE 383
           R P ++R++ +PN+LE    LP++  E
Sbjct: 114 RAPAKEREEIAPNTLENVSKLPKQHQE 140


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 265 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 372
           ++  KL++ KL D  L +   +P +  WN  KC  E
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,723
Number of Sequences: 28952
Number of extensions: 306448
Number of successful extensions: 834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)