Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1006
(762 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D56089 Cluster: PREDICTED: similar to CG6349-PA;... 144 2e-33
UniRef50_P26019 Cluster: DNA polymerase alpha catalytic subunit;... 125 1e-27
UniRef50_Q16ZB1 Cluster: DNA polymerase; n=2; Culicidae|Rep: DNA... 116 5e-25
UniRef50_UPI00015B4719 Cluster: PREDICTED: similar to DNA polyme... 111 1e-23
UniRef50_UPI0000DB7455 Cluster: PREDICTED: similar to DNA polyme... 108 2e-22
UniRef50_P09884 Cluster: DNA polymerase alpha catalytic subunit;... 104 3e-21
UniRef50_Q9NAH1 Cluster: DNA polymerase; n=2; Caenorhabditis|Rep... 100 8e-20
UniRef50_Q4SMZ1 Cluster: DNA polymerase; n=3; Deuterostomia|Rep:... 85 2e-18
UniRef50_Q4P5T4 Cluster: DNA polymerase; n=1; Ustilago maydis|Re... 88 3e-16
UniRef50_UPI00015B62CE Cluster: PREDICTED: similar to DNA polyme... 87 6e-16
UniRef50_A7PLB6 Cluster: Chromosome chr7 scaffold_20, whole geno... 86 1e-15
UniRef50_A7SAB6 Cluster: Predicted protein; n=1; Nematostella ve... 85 1e-15
UniRef50_Q9FHA3 Cluster: DNA polymerase alpha catalytic subunit;... 85 2e-15
UniRef50_O48653 Cluster: DNA polymerase alpha catalytic subunit;... 84 3e-15
UniRef50_Q7ZA56 Cluster: DNA polymerase; n=1; Coprinopsis cinere... 79 1e-13
UniRef50_Q8I944 Cluster: DNA polymerase; n=3; Urostyla grandis|R... 77 5e-13
UniRef50_Q55RB8 Cluster: DNA polymerase; n=2; Filobasidiella neo... 74 3e-12
UniRef50_Q4N0E2 Cluster: DNA polymerase alpha, putative; n=3; Th... 72 1e-11
UniRef50_P28040 Cluster: DNA polymerase alpha catalytic subunit;... 72 1e-11
UniRef50_Q013X2 Cluster: DNA polymerase; n=2; Ostreococcus|Rep: ... 72 2e-11
UniRef50_Q27152 Cluster: DNA polymerase alpha catalytic subunit;... 71 3e-11
UniRef50_O00874 Cluster: DNA polymerase alpha catalytic subunit;... 70 7e-11
UniRef50_A3QME0 Cluster: DNA polymerase; n=2; Euplotes|Rep: DNA ... 69 2e-10
UniRef50_A5DZ55 Cluster: DNA polymerase; n=5; Saccharomycetales|... 67 5e-10
UniRef50_Q23AJ0 Cluster: DNA polymerase catalytic subunit; n=2; ... 65 2e-09
UniRef50_A7AR93 Cluster: DNA polymerase alpha subunit, putative;... 64 4e-09
UniRef50_Q8TWJ5 Cluster: DNA polymerase; n=1; Methanopyrus kandl... 64 5e-09
UniRef50_Q5CU42 Cluster: DNA polymerase; n=2; Cryptosporidium|Re... 63 6e-09
UniRef50_Q9Y1T1 Cluster: DNA polymerase; n=1; Toxoplasma gondii|... 63 8e-09
UniRef50_Q54SV8 Cluster: DNA polymerase; n=1; Dictyostelium disc... 63 8e-09
UniRef50_Q5B0J8 Cluster: DNA polymerase; n=28; Eukaryota|Rep: DN... 61 3e-08
UniRef50_A0D7P3 Cluster: DNA polymerase; n=1; Paramecium tetraur... 55 2e-06
UniRef50_O33845 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu) [... 54 5e-06
UniRef50_UPI0000499846 Cluster: DNA polymerase alpha catalytic s... 53 7e-06
UniRef50_A3QME1 Cluster: DNA polymerase; n=1; Eschaneustyla sp. ... 53 7e-06
UniRef50_A0B8Z8 Cluster: DNA polymerase; n=1; Methanosaeta therm... 52 2e-05
UniRef50_P13382 Cluster: DNA polymerase alpha catalytic subunit ... 50 5e-05
UniRef50_Q0W0J7 Cluster: DNA-directed DNA polymerase B; n=1; unc... 50 8e-05
UniRef50_P30317 Cluster: DNA polymerase (EC 2.7.7.7) (Vent DNA p... 50 8e-05
UniRef50_P52431 Cluster: DNA polymerase delta catalytic subunit;... 49 1e-04
UniRef50_P90829 Cluster: DNA polymerase delta catalytic subunit;... 48 2e-04
UniRef50_Q6C675 Cluster: DNA polymerase; n=1; Yarrowia lipolytic... 48 3e-04
UniRef50_P52025 Cluster: DNA polymerase; n=6; Methanococcus|Rep:... 48 3e-04
UniRef50_Q308M6 Cluster: DNA polymerase; n=1; Homo sapiens|Rep: ... 48 3e-04
UniRef50_Q58295 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: ... 48 3e-04
UniRef50_P28340 Cluster: DNA polymerase delta catalytic subunit;... 48 3e-04
UniRef50_O59610 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: ... 47 4e-04
UniRef50_Q9TX75 Cluster: DNA polymerase alpha, DNAPOL alpha; n=1... 46 0.001
UniRef50_P74918 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu) [... 44 0.003
UniRef50_Q8SRW2 Cluster: DNA polymerase; n=1; Encephalitozoon cu... 44 0.005
UniRef50_A5KAH7 Cluster: DNA polymerase; n=1; Plasmodium vivax|R... 43 0.010
UniRef50_UPI0000499E46 Cluster: DNA polymerase delta catalytic s... 42 0.017
UniRef50_A7QST5 Cluster: Chromosome chr4 scaffold_162, whole gen... 42 0.022
UniRef50_A5UNA8 Cluster: DNA-directed DNA polymerase, family B, ... 41 0.029
UniRef50_A6DKJ0 Cluster: DNA polymerase II; n=1; Lentisphaera ar... 41 0.038
UniRef50_A6R857 Cluster: DNA polymerase; n=1; Ajellomyces capsul... 41 0.038
UniRef50_O93745 Cluster: DNA polymerase 1; n=1; Aeropyrum pernix... 40 0.051
UniRef50_Q4Y991 Cluster: DNA polymerase; n=9; Plasmodium (Vincke... 40 0.067
UniRef50_Q5CWN2 Cluster: DNA polymerase; n=3; Cryptosporidium|Re... 40 0.089
UniRef50_A7EFB8 Cluster: Putative uncharacterized protein; n=1; ... 39 0.16
UniRef50_Q0V5M4 Cluster: DNA polymerase; n=2; Pezizomycotina|Rep... 37 0.47
UniRef50_A2FME7 Cluster: DNA polymerase; n=1; Trichomonas vagina... 37 0.63
UniRef50_A2DY14 Cluster: DNA polymerase; n=2; Trichomonas vagina... 37 0.63
UniRef50_Q8TSB3 Cluster: DNA polymerase; n=4; Methanosarcinaceae... 37 0.63
UniRef50_UPI00006CB5C2 Cluster: hypothetical protein TTHERM_0053... 36 0.83
UniRef50_Q2H423 Cluster: DNA polymerase; n=6; Pezizomycotina|Rep... 36 0.83
UniRef50_Q8I5I1 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q22HL1 Cluster: DNA polymerase family B containing prot... 36 1.1
UniRef50_A2DDR9 Cluster: DNA polymerase; n=1; Trichomonas vagina... 36 1.1
UniRef50_Q8SQP5 Cluster: DNA polymerase; n=1; Encephalitozoon cu... 36 1.1
UniRef50_Q7QQB5 Cluster: DNA polymerase; n=2; Giardia intestinal... 35 1.9
UniRef50_Q27RS8 Cluster: DNA polymerase; n=36; Neurospora|Rep: D... 35 1.9
UniRef50_A3DMW2 Cluster: DNA polymerase; n=1; Staphylothermus ma... 35 1.9
UniRef50_Q57YY4 Cluster: DNA polymerase zeta catalytic subunit, ... 35 2.5
UniRef50_O76329 Cluster: Interaptin; n=2; Dictyostelium discoide... 35 2.5
UniRef50_A0DPB1 Cluster: Chromosome undetermined scaffold_59, wh... 35 2.5
UniRef50_A4RU11 Cluster: Predicted protein; n=1; Ostreococcus lu... 34 3.3
UniRef50_Q55Y13 Cluster: DNA polymerase; n=2; Filobasidiella neo... 34 3.3
UniRef50_Q820N6 Cluster: UvrABC system protein C; n=3; Proteobac... 34 4.4
UniRef50_Q8EM11 Cluster: Hypothetical conserved protein; n=1; Oc... 33 5.8
UniRef50_Q1IJG7 Cluster: Alanyl-tRNA synthetase; n=3; cellular o... 33 5.8
UniRef50_Q7RK77 Cluster: Putative uncharacterized protein PY0302... 33 7.7
UniRef50_A2E9P0 Cluster: DNA polymerase; n=1; Trichomonas vagina... 33 7.7
UniRef50_Q9P6L6 Cluster: DNA polymerase; n=1; Schizosaccharomyce... 33 7.7
>UniRef50_UPI0000D56089 Cluster: PREDICTED: similar to CG6349-PA; n=1;
Tribolium castaneum|Rep: PREDICTED: similar to CG6349-PA
- Tribolium castaneum
Length = 1406
Score = 144 bits (350), Expect = 2e-33
Identities = 70/166 (42%), Positives = 99/166 (59%)
Frame = +2
Query: 260 SKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISR 439
+K ++ GD VPY+IC+DGT N ATQRAYHIEELKNSE LK+D YYLA+Q+HPV+SR
Sbjct: 1106 NKQGGHYRAGDTVPYLICDDGTKNPATQRAYHIEELKNSETLKIDVTYYLANQIHPVVSR 1165
Query: 440 ICEPIEGMDPARVADCLGLDPSGTNKLLKEKPTTRKLMRSRTNKKSTDNAKSLSSNASMK 619
ICEPIE +D +++DCLG+D S K+ + ++ ++ D K
Sbjct: 1166 ICEPIEALDLVQISDCLGVDSSNLRKVKVDDDNGENVIDPEIKFRNVD-------KFVFK 1218
Query: 620 L*NFEQSTRIDL*TGQRDISFLDRCQNEKCNVKPLDYLSSVQNQLS 757
E +D +I L +CQN +C +P DY+ +QNQ++
Sbjct: 1219 CLVCESENTVD-GPFSNNIPVLQKCQNARCKARPADYVPFIQNQMT 1263
Score = 111 bits (268), Expect = 1e-23
Identities = 51/84 (60%), Positives = 71/84 (84%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LDIVRRDWS+LAAEAGKF+L+QILS+Q+ ++R +I HL++L++DL K+PLS+L IT
Sbjct: 1021 LDIVRRDWSRLAAEAGKFVLNQILSDQSSENRFLNILTHLSQLREDLQEGKVPLSLLVIT 1080
Query: 183 KQLTKNPNEYADKHTQSHVQVALR 254
KQL+KNP++Y + +T HVQVA+R
Sbjct: 1081 KQLSKNPDQYPEDNTLPHVQVAIR 1104
>UniRef50_P26019 Cluster: DNA polymerase alpha catalytic subunit; n=2;
Sophophora|Rep: DNA polymerase alpha catalytic subunit -
Drosophila melanogaster (Fruit fly)
Length = 1488
Score = 125 bits (301), Expect = 1e-27
Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 8/179 (4%)
Frame = +2
Query: 248 IEVNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSE--HLKVDFKYYLAHQL 421
+ +N + +RR+KKGD+V Y+IC DGT N+A QRAYH++ELK SE L++D YYL HQ+
Sbjct: 1169 LRMNRERNRRYKKGDMVDYVICLDGTTNAAMQRAYHLDELKTSEDKKLQLDTNYYLGHQI 1228
Query: 422 HPVISRICEPIEGMDPARVADCLGLDPS--GTNKLLKEKPTTRKLMRSRTNKKSTDNAKS 595
HPV++R+ E +EG D +R+A+CLG+DP+ N ++ T + + K+T
Sbjct: 1229 HPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRTQRENTEQ-SEGESLLKTTLQLYR 1287
Query: 596 LSSNASMK--L*NFEQSTRIDL*TGQRD--ISFLDRCQNEKCNVKPLDYLSSVQNQLSL 760
L + EQ G + I+ L +C +C P+ YL+SV+NQL L
Sbjct: 1288 LCEPFRFQCVTCKTEQLMASAYRPGPSNSHIAVLQQCAKSECQTAPIQYLASVRNQLQL 1346
Score = 90.6 bits (215), Expect = 4e-17
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LDIVRRDWSQLA GK +L ++LSE+ +++L+++ L K+K + +PL + IT
Sbjct: 1087 LDIVRRDWSQLAVMVGKAVLDEVLSEKPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVIT 1146
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
KQLT+ P EYA+ + HVQVALR+
Sbjct: 1147 KQLTRTPQEYANSASLPHVQVALRM 1171
>UniRef50_Q16ZB1 Cluster: DNA polymerase; n=2; Culicidae|Rep: DNA
polymerase - Aedes aegypti (Yellowfever mosquito)
Length = 1508
Score = 116 bits (280), Expect = 5e-25
Identities = 68/179 (37%), Positives = 98/179 (54%), Gaps = 10/179 (5%)
Frame = +2
Query: 248 IEVNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELK---NSEHLKVDFKYYLAHQ 418
+ +N + +R FK+GD+V YIIC+DGT+ +A +RAYHI+ELK N + LK D +YYL+ Q
Sbjct: 1170 MRMNKQRNRNFKRGDVVGYIICDDGTSAAAMKRAYHIDELKDPANKDKLKPDVEYYLSQQ 1229
Query: 419 LHPVISRICEPIEGMDPARVADCLGLDPSGTNKL---LKEKPTT----RKLMRSRTNKKS 577
+ PV+ RICEP+EG D R+A CLGLDP L LK+ + ++ T K
Sbjct: 1230 VFPVVFRICEPLEGTDACRLAMCLGLDPKKFQSLGMALKDNERNYVDGEAVQQTITQKYR 1289
Query: 578 TDNAKSLSSNASMKL*NFEQSTRIDL*TGQRDISFLDRCQNEKCNVKPLDYLSSVQNQL 754
+ + + D G R S ++C+NE C V P Y ++ NQL
Sbjct: 1290 HCHWFEFTCVVCKTKNPVASGFKPD---GGRYKSVFEKCRNESCKVLPQQYRPAIVNQL 1345
Score = 95.9 bits (228), Expect = 1e-18
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LDIVRRDWS+LA AG F++S+ILS++ DDR+E+I L KL+DDL+ S+L IT
Sbjct: 1088 LDIVRRDWSKLAVIAGNFVISEILSDKPMDDRIENIHTKLEKLRDDLLNGVTYPSLLEIT 1147
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
KQLT++ NEY+D HV VA+R+
Sbjct: 1148 KQLTRSLNEYSDAAQLPHVTVAMRM 1172
>UniRef50_UPI00015B4719 Cluster: PREDICTED: similar to DNA polymerase
alpha catalytic subunit; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to DNA polymerase alpha catalytic
subunit - Nasonia vitripennis
Length = 1512
Score = 111 bits (268), Expect = 1e-23
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Frame = +2
Query: 248 IEVNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHP 427
+ +N R++K GD VPYIICEDGT + +RAYHIEE K +++LK+D YYL Q+HP
Sbjct: 1190 LRLNESGGRKWKAGDTVPYIICEDGTDKTPLERAYHIEEFKKNDNLKIDVNYYLLQQIHP 1249
Query: 428 VISRICEPIEGMDPARVADCLGLD----PSGTNKLLKEKPTTRKLMRSRTNKKSTDNAKS 595
V+ RICEPIEG+D +A +G+ P + +E + +R + K
Sbjct: 1250 VVLRICEPIEGIDDVLLAQHIGVGDLYKPKKVHTAQEEGEVPLCIQDNRYDNCHPLKFKC 1309
Query: 596 LSSNASMKL*NFEQSTRIDL*TGQRDISFLDRCQNEKCNVKPLDYLSSVQNQL 754
+ N ++ E T I G + L C N C++ P Y ++QN+L
Sbjct: 1310 KNENCKFEI---EIKTTITEFAGVPRPT-LALCPNPACDMPPWRYADAIQNRL 1358
Score = 85.0 bits (201), Expect = 2e-15
Identities = 43/85 (50%), Positives = 59/85 (69%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LDIVRRDW LA + G IL Q+LS+Q+ + R+ I + L ++ ++L +PLS+L IT
Sbjct: 1108 LDIVRRDWCGLACDIGNQILDQLLSDQSSESRVGKIFDILQQVGNNLREGNLPLSLLVIT 1167
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
KQL+KNP+EY + SHV VALRL
Sbjct: 1168 KQLSKNPHEYPNDKKLSHVLVALRL 1192
>UniRef50_UPI0000DB7455 Cluster: PREDICTED: similar to DNA polymerase
alpha catalytic subunit; n=1; Apis mellifera|Rep:
PREDICTED: similar to DNA polymerase alpha catalytic
subunit - Apis mellifera
Length = 1239
Score = 108 bits (259), Expect = 2e-22
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = +2
Query: 248 IEVNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHP 427
+ +N + R +K GD VPYIIC+DGT SAT+RAYHI+E K ++ LK+D YYL +Q+ P
Sbjct: 994 LRLNKEGGRMWKTGDTVPYIICDDGTEKSATERAYHIDEYKKNDFLKIDVNYYLLNQIFP 1053
Query: 428 VISRICEPIEGMDPARVADCLG 493
++ RIC+PIEG D +A CLG
Sbjct: 1054 IVLRICDPIEGFDDVLLAKCLG 1075
Score = 91.1 bits (216), Expect = 3e-17
Identities = 48/85 (56%), Positives = 60/85 (70%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LDIVRRDW QLA + GK IL +LS Q +DR+E I L+ + ++ N++ LS L IT
Sbjct: 913 LDIVRRDWCQLACDTGKKILDHLLSNQPCEDRIEQIFMILHDVAQNVRENQISLSSLVIT 972
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
KQL+KNPNEY D Q+HVQVALRL
Sbjct: 973 KQLSKNPNEYPDT-KQAHVQVALRL 996
>UniRef50_P09884 Cluster: DNA polymerase alpha catalytic subunit;
n=37; Eumetazoa|Rep: DNA polymerase alpha catalytic
subunit - Homo sapiens (Human)
Length = 1462
Score = 104 bits (249), Expect = 3e-21
Identities = 43/84 (51%), Positives = 64/84 (76%)
Frame = +2
Query: 254 VNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVI 433
+NS+ R+ K GD V Y+IC+DG+ +A+QRAY E+L+ ++L +D +YYLA Q+HPV+
Sbjct: 1161 INSQGGRKVKAGDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVV 1220
Query: 434 SRICEPIEGMDPARVADCLGLDPS 505
+RICEPI+G+D +A LGLDP+
Sbjct: 1221 ARICEPIDGIDAVLIATWLGLDPT 1244
Score = 84.2 bits (199), Expect = 3e-15
Identities = 38/83 (45%), Positives = 56/83 (67%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LDIVRRDW LA + G F++ QILS+Q+ D +E+IQ L ++ ++++ +P+S I
Sbjct: 1077 LDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEIN 1136
Query: 183 KQLTKNPNEYADKHTQSHVQVAL 251
K LTK+P +Y DK + HV VAL
Sbjct: 1137 KALTKDPQDYPDKKSLPHVHVAL 1159
>UniRef50_Q9NAH1 Cluster: DNA polymerase; n=2; Caenorhabditis|Rep: DNA
polymerase - Caenorhabditis elegans
Length = 1428
Score = 99.5 bits (237), Expect = 8e-20
Identities = 45/97 (46%), Positives = 60/97 (61%)
Frame = +2
Query: 254 VNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVI 433
+N + DIV Y+ICEDGT N ATQRAYH E+ + LK+D YYLA Q+HPV+
Sbjct: 1126 LNKSGKFNLRHNDIVEYVICEDGTDNPATQRAYHRTEMAENSALKIDLLYYLAQQIHPVV 1185
Query: 434 SRICEPIEGMDPARVADCLGLDPSGTNKLLKEKPTTR 544
SR+ EPIE D R+A+ LGLD + + + + R
Sbjct: 1186 SRLVEPIEETDAVRIAENLGLDSTNYRRAAAAQASQR 1222
Score = 79.0 bits (186), Expect = 1e-13
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQ-TPDDRLESIQNHLNKLKDDLIGNKMPLSVLAI 179
LDIVRRDWSQLA E G ++ +IL T D+ + SI + L +++ L +PL + I
Sbjct: 1041 LDIVRRDWSQLAKETGTAVVDKILDASLTRDEMVSSIDDLLREIRAKLDSGTVPLEMFQI 1100
Query: 180 TKQLTKNPNEYADKHTQSHVQVALRL 257
+KQLT+NP +YAD Q H VA RL
Sbjct: 1101 SKQLTRNPEQYADVKAQCHAAVAQRL 1126
>UniRef50_Q4SMZ1 Cluster: DNA polymerase; n=3; Deuterostomia|Rep: DNA
polymerase - Tetraodon nigroviridis (Green puffer)
Length = 1753
Score = 84.6 bits (200), Expect(2) = 2e-18
Identities = 36/67 (53%), Positives = 52/67 (77%)
Frame = +2
Query: 305 IICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVAD 484
++ +DG+ +A+QRAY +E+L+ E L +D +YYLA Q+HPV+SRIC+PIEG+D VA
Sbjct: 1465 VLTQDGSTLAASQRAYALEQLQKQEALSLDTQYYLAQQVHPVVSRICDPIEGIDGVLVAT 1524
Query: 485 CLGLDPS 505
LGLDP+
Sbjct: 1525 WLGLDPA 1531
Score = 82.6 bits (195), Expect = 1e-14
Identities = 39/83 (46%), Positives = 55/83 (66%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LDIVRRDW LA + G +++ QILS+Q+ D +E+IQ HL ++ + + +PLS I
Sbjct: 1329 LDIVRRDWCDLAKDCGNYVIGQILSDQSRDVIVENIQKHLVEVGEKVAAGDVPLSQYEIH 1388
Query: 183 KQLTKNPNEYADKHTQSHVQVAL 251
K LTK+P +Y DK + HV VAL
Sbjct: 1389 KALTKDPQDYPDKKSLPHVHVAL 1411
Score = 30.7 bits (66), Expect(2) = 2e-18
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 254 VNSKNSRRFKKGDIVPYIICE 316
+NS+ RR K GD V YIIC+
Sbjct: 1413 INSQGGRRVKAGDTVSYIICK 1433
>UniRef50_Q4P5T4 Cluster: DNA polymerase; n=1; Ustilago maydis|Rep:
DNA polymerase - Ustilago maydis (Smut fungus)
Length = 1667
Score = 87.8 bits (208), Expect = 3e-16
Identities = 40/81 (49%), Positives = 61/81 (75%), Gaps = 6/81 (7%)
Frame = +2
Query: 281 KKGDIVPYIIC--EDGTANSAT---QRAYHIEELKNSE-HLKVDFKYYLAHQLHPVISRI 442
+ GD++PYI C EDGT+++ T +RA+H +EL+ + LK+D+++YLA Q+ P + R+
Sbjct: 1331 RMGDVIPYIFCLGEDGTSSTKTAQAERAHHPDELRRKDSELKIDYEHYLALQILPPVERL 1390
Query: 443 CEPIEGMDPARVADCLGLDPS 505
CE IEG D +R+A+CLGLDPS
Sbjct: 1391 CESIEGTDRSRLAECLGLDPS 1411
Score = 62.9 bits (146), Expect = 8e-09
Identities = 32/88 (36%), Positives = 51/88 (57%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+ RR++S L+ ++L QILS Q + +E I +L+ + + ++ L I
Sbjct: 1239 LDMKRREYSALSKNVSNYVLEQILSGQATELVVEHIHEYLSDISTKIKMGEVGLDDFIIY 1298
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVK 266
K+L KNP +Y D +Q HVQVALR+ +
Sbjct: 1299 KRLGKNPEDYPDVKSQPHVQVALRMKTR 1326
>UniRef50_UPI00015B62CE Cluster: PREDICTED: similar to DNA polymerase
alpha catalytic subunit; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to DNA polymerase alpha catalytic
subunit - Nasonia vitripennis
Length = 1120
Score = 86.6 bits (205), Expect = 6e-16
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
Frame = +2
Query: 254 VNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVI 433
+N N+R++K GD+ D T +RAYHIEE K +E +K+D YYL + + P+I
Sbjct: 831 LNKINARKWKAGDV-------DNTTRKPLERAYHIEEFKTNEQIKIDETYYLMYHIFPII 883
Query: 434 SRICEPIEGMDPARVADCLGLDPSGTNKLLKEKPTTRKLMRSRTNKKSTDNAKSLSSNA- 610
+IC+PIEG++ +A LG+ K + + + + N+ N L
Sbjct: 884 HKICDPIEGIENVLIAQSLGIADLYKPKKISDHRDAKMPLSLHDNRNK--NCVPLQFKCR 941
Query: 611 SMKL*NFEQSTRIDL*TGQRDISFLDRCQNEKCNVKPLDYLSSVQNQLSL 760
K N +++ I +G + L C N KCN P Y +QNQL L
Sbjct: 942 DCKTKNKIKTSVIHTKSGCQ--PSLATCTNSKCNTPPWKYPHFIQNQLQL 989
Score = 59.7 bits (138), Expect = 8e-08
Identities = 33/85 (38%), Positives = 53/85 (62%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+I+RRD LA++ G +L ++L +Q R ++I L +L K+P+S L IT
Sbjct: 748 LEIIRRDCCALASDTGHKVLEELLKDQPSHIRSKNIFEILETTNRELREGKLPMSSLEIT 807
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
K+L+K+P++Y +K+ HV VA RL
Sbjct: 808 KKLSKDPDKYPNKN-HPHVIVAERL 831
>UniRef50_A7PLB6 Cluster: Chromosome chr7 scaffold_20, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_20, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1495
Score = 85.8 bits (203), Expect = 1e-15
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 6/79 (7%)
Frame = +2
Query: 287 GDIVPYIIC-EDGTANSAT----QRAYHIEELKNSE-HLKVDFKYYLAHQLHPVISRICE 448
GD VPYIIC E GT++ ++ QRA H +ELK +D YYLA Q+HPV+SR+C
Sbjct: 1189 GDTVPYIICCEQGTSSGSSTGIAQRARHPDELKRDNGKWMIDIDYYLAQQIHPVVSRLCA 1248
Query: 449 PIEGMDPARVADCLGLDPS 505
I+G PAR+ADCLGLD S
Sbjct: 1249 SIQGTSPARLADCLGLDSS 1267
Score = 85.4 bits (202), Expect = 1e-15
Identities = 46/85 (54%), Positives = 58/85 (68%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+VRRDWS L+ E G F LSQILS + +D +ESI N L K+++D+ ++ L IT
Sbjct: 1094 LDMVRRDWSLLSKELGDFSLSQILSGGSCEDVVESIHNSLMKVQEDMRNGEVALEKYIIT 1153
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
K LTK P Y DK+ Q HVQVALRL
Sbjct: 1154 KSLTKPPEAYPDKN-QPHVQVALRL 1177
>UniRef50_A7SAB6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1242
Score = 85.4 bits (202), Expect = 1e-15
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LDIVRRDW LA +AG ++LSQILS Q+ + ++++ + L + +D+ G K+ L I
Sbjct: 860 LDIVRRDWCDLAKDAGNYVLSQILSAQSREAIVDNVHDFLITIGEDVKGGKVDLQKYVIN 919
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKT----VGDSKKATLC 299
KQLTK P++Y DK + HV VAL L K+ VGD+ +C
Sbjct: 920 KQLTKAPHDYPDKKSLPHVHVALWLMSKSRKVGVGDTIPYVIC 962
Score = 47.6 bits (108), Expect = 3e-04
Identities = 28/80 (35%), Positives = 37/80 (46%)
Frame = +2
Query: 269 SRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
SR+ GD +PY+IC+ + L L IS I +
Sbjct: 948 SRKVGVGDTIPYVICDVSMHLPLVTCGALVHYLLRYLWRTCTLSLTLPVTHVYTISYISD 1007
Query: 449 PIEGMDPARVADCLGLDPSG 508
PI+G D AR+A+CLGLDPSG
Sbjct: 1008 PIDGTDSARIAECLGLDPSG 1027
>UniRef50_Q9FHA3 Cluster: DNA polymerase alpha catalytic subunit; n=1;
Arabidopsis thaliana|Rep: DNA polymerase alpha catalytic
subunit - Arabidopsis thaliana (Mouse-ear cress)
Length = 1492
Score = 84.6 bits (200), Expect = 2e-15
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 14/129 (10%)
Frame = +2
Query: 278 FKKGDIVPYIIC-EDGTANSAT-----QRAYHIEELKNS-EHLKVDFKYYLAHQLHPVIS 436
F D VPYIIC E G A+SA+ +RA H +E+K+ VD YYLA Q+HPV+S
Sbjct: 1213 FNAKDTVPYIICYEQGNASSASSAGIAERARHPDEVKSEGSRWLVDIDYYLAQQIHPVVS 1272
Query: 437 RICEPIEGMDPARVADCLGLDP----SGTNKLLKEKPTTRKLMRS---RTNKKSTDNAKS 595
R+C I+G P R+A+CLGLDP S +N P+T L + + K +T +
Sbjct: 1273 RLCAEIQGTSPERLAECLGLDPSKYRSKSNDATSSDPSTSLLFATSDEESKKPATPETEE 1332
Query: 596 LSSNASMKL 622
S +KL
Sbjct: 1333 SDSTFWLKL 1341
Score = 78.2 bits (184), Expect = 2e-13
Identities = 39/85 (45%), Positives = 55/85 (64%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
+D+VRRDWS L+ E G LS+IL + +D +E+I N L K+K+++ ++ L IT
Sbjct: 1120 VDMVRRDWSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVIT 1179
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
K LTK P Y D +Q HVQVALR+
Sbjct: 1180 KTLTKPPAAYPDSKSQPHVQVALRM 1204
>UniRef50_O48653 Cluster: DNA polymerase alpha catalytic subunit; n=4;
Oryza sativa|Rep: DNA polymerase alpha catalytic subunit
- Oryza sativa subsp. japonica (Rice)
Length = 1534
Score = 84.2 bits (199), Expect = 3e-15
Identities = 43/85 (50%), Positives = 56/85 (65%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+VRRDWS L+ E G F L+QILS + DD +ESI + L ++++ + G + L IT
Sbjct: 1128 LDMVRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIIT 1187
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
K LTK P +Y D Q HVQVALRL
Sbjct: 1188 KSLTKAPEDYPDAKNQPHVQVALRL 1212
Score = 84.2 bits (199), Expect = 3e-15
Identities = 43/87 (49%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSA-----TQRAYHIEELK-NSEHLKVDFKYYLAHQLHPVISRICE 448
GD VPYIIC + S QRA H EELK N + +D YYL+ Q+HPV+SR+C
Sbjct: 1223 GDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCA 1282
Query: 449 PIEGMDPARVADCLGLDPSGTNKLLKE 529
I+G PAR+A+CLGLD S L E
Sbjct: 1283 SIQGTSPARLAECLGLDSSKFQSRLTE 1309
>UniRef50_Q7ZA56 Cluster: DNA polymerase; n=1; Coprinopsis
cinerea|Rep: DNA polymerase - Coprinus cinereus (Inky cap
fungus) (Hormographiella aspergillata)
Length = 1426
Score = 79.0 bits (186), Expect = 1e-13
Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 5/78 (6%)
Frame = +2
Query: 287 GDIVPYIIC----EDGTANSATQRAYHIEELKNSEHL-KVDFKYYLAHQLHPVISRICEP 451
GD++PYI C E+ + RA H +E++ + K+D+++YLAHQ+ P I R+C+
Sbjct: 1144 GDVIPYIFCLGEGEESARTTQADRARHPDEVRRGAGVVKIDYEWYLAHQVLPPIERLCDA 1203
Query: 452 IEGMDPARVADCLGLDPS 505
IEG D AR+A+CLGLDP+
Sbjct: 1204 IEGTDRARLAECLGLDPN 1221
Score = 68.5 bits (160), Expect = 2e-10
Identities = 31/88 (35%), Positives = 55/88 (62%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+ RR++ L+ E +++L++ILS + +D +E+I +L + ++ ++ L +
Sbjct: 1050 LDMKRREYCALSKEVSQYVLARILSGDSTEDVVETIHEYLGTMSQNVRSGQVKLEDFIVF 1109
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVK 266
K+L KNP +Y D +Q HVQVALR+ K
Sbjct: 1110 KRLGKNPEDYPDAKSQPHVQVALRMKAK 1137
>UniRef50_Q8I944 Cluster: DNA polymerase; n=3; Urostyla grandis|Rep:
DNA polymerase - Urostyla grandis
Length = 1356
Score = 77.0 bits (181), Expect = 5e-13
Identities = 39/85 (45%), Positives = 52/85 (61%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+VRRDW LA AG F+L QILS Q +D + ++ HL+ L + N++PL I
Sbjct: 1073 LDMVRRDWCALAKNAGDFVLDQILSGQQREDIVLTLTEHLSNLGQRMKNNQIPLKEYVIN 1132
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
KQ+T+ +EY D HV VALRL
Sbjct: 1133 KQITRALSEYHDTKALPHVAVALRL 1157
Score = 61.7 bits (143), Expect = 2e-08
Identities = 26/74 (35%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Frame = +2
Query: 290 DIVPYIIC--EDGTANSATQRAYHIEELKNSE-HLKVDFKYYLAHQLHPVISRICEPIEG 460
+ +PY+IC +D + +++AYH +E+ S+ +++D +Y+ Q+ P+ISR+ E IEG
Sbjct: 1168 NFIPYVICTEQDKKSQFLSEKAYHPDEVLTSKGKIQLDVDWYITQQILPIISRLIEHIEG 1227
Query: 461 MDPARVADCLGLDP 502
++ +A C G+DP
Sbjct: 1228 IEADFIAQCFGIDP 1241
>UniRef50_Q55RB8 Cluster: DNA polymerase; n=2; Filobasidiella
neoformans|Rep: DNA polymerase - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 1494
Score = 74.1 bits (174), Expect = 3e-12
Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 6/77 (7%)
Frame = +2
Query: 290 DIVPYIICED----GTANSATQRAYHIEELKNS-EHLKVDFKYYLAHQ-LHPVISRICEP 451
D++PYIIC D G ++ RA+H ++L+ L++D +YYL Q LHP++ R+CE
Sbjct: 1204 DVIPYIICLDEHGKGGKTASADRAFHPDDLRRQGSELRIDHEYYLDQQILHPIL-RLCET 1262
Query: 452 IEGMDPARVADCLGLDP 502
IEG + AR+A+CLGLDP
Sbjct: 1263 IEGTERARLAECLGLDP 1279
Score = 70.5 bits (165), Expect = 4e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+ RR++S+++ +A IL +ILS + + +E I L KL + + N++P+ I
Sbjct: 1109 LDMKRREFSKVSKDASAAILKEILSGEATEVVVEKIHELLTKLGEAVRNNEIPIDDYIIF 1168
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVK 266
K+L KNP +Y DK +Q HVQVALR+ K
Sbjct: 1169 KRLGKNPEDYPDKKSQPHVQVALRMKQK 1196
>UniRef50_Q4N0E2 Cluster: DNA polymerase alpha, putative; n=3;
Theileria|Rep: DNA polymerase alpha, putative - Theileria
parva
Length = 1451
Score = 72.1 bits (169), Expect = 1e-11
Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQT---PDDRLESIQNHLNKLKDDLIGNKMPLSVL 173
LD +RRDWS L E G +L+ IL+ D ++ I + L L + L + LS
Sbjct: 980 LDFIRRDWSLLTKEIGNKLLNIILNSNYYDGVDGIVQEIHSTLINLNEQLNNQSIELSKF 1039
Query: 174 AITKQLTKNPNEYADKHTQSHVQVALRLTVKTVGD 278
ITKQLTKNP EY+D HV VALRL K +G+
Sbjct: 1040 LITKQLTKNPKEYSDVQNLPHVSVALRLNEKGLGN 1074
Score = 42.3 bits (95), Expect = 0.013
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +2
Query: 332 SATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGLDPS 505
S + RA+ E+ + L+VD YY QL P I R+C IEG D R++ CL ++ S
Sbjct: 1119 SLSFRAFSYNEVMENG-LEVDISYYKQQQLLPPILRLCSIIEGTDIQRLSRCLQIEKS 1175
>UniRef50_P28040 Cluster: DNA polymerase alpha catalytic subunit; n=2;
Schizosaccharomyces pombe|Rep: DNA polymerase alpha
catalytic subunit - Schizosaccharomyces pombe (Fission
yeast)
Length = 1405
Score = 72.1 bits (169), Expect = 1e-11
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEGM 463
GD++P+II RAY +E+ N+ L +D+ YYL+HQ+ P I R+ PIEG
Sbjct: 1147 GDVIPFIIAGSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEGT 1206
Query: 464 DPARVADCLGLD 499
+ AR+A+CLGLD
Sbjct: 1207 NRARLAECLGLD 1218
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/84 (38%), Positives = 48/84 (57%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+ RR++ LA EA KF L QILS + + +E+I ++L + + K P + I
Sbjct: 1053 LDMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFSEKMRNGKFPANKFIIF 1112
Query: 183 KQLTKNPNEYADKHTQSHVQVALR 254
+L KNP +Y + T VQVAL+
Sbjct: 1113 NRLGKNPEDYPNGKTMPFVQVALK 1136
>UniRef50_Q013X2 Cluster: DNA polymerase; n=2; Ostreococcus|Rep: DNA
polymerase - Ostreococcus tauri
Length = 1530
Score = 71.7 bits (168), Expect = 2e-11
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILS-EQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAI 179
LDIVRRDW+ L E GK L ++L + ++R+ +I + L +++ +++ N++PL I
Sbjct: 1118 LDIVRRDWAPLVKEIGKQTLEELLEVDGELEERVTAIHDLLREIRVEMVANRVPLDKYII 1177
Query: 180 TKQLTKNPNEYADKHTQSHVQVALRLTVKTVGDSKKATLCLTLYVKME 323
TKQLTK EY D Q HV VA R D +A + + ME
Sbjct: 1178 TKQLTKAVEEYPDAKHQPHVMVAKRRLEAGKQDGVRAGETVPYIIAME 1225
Score = 71.3 bits (167), Expect = 2e-11
Identities = 30/53 (56%), Positives = 42/53 (79%)
Frame = +2
Query: 341 QRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGLD 499
+RAYH +E+K +LK+D YYL+ Q+HPVISR+C PIE D A++A+CLG+D
Sbjct: 1248 ERAYHPDEVKE-RNLKIDLHYYLSQQVHPVISRLCAPIEETDGAKMAECLGMD 1299
>UniRef50_Q27152 Cluster: DNA polymerase alpha catalytic subunit;
n=21; Spirotrichea|Rep: DNA polymerase alpha catalytic
subunit - Oxytricha trifallax (Sterkiella
histriomuscorum)
Length = 1513
Score = 70.9 bits (166), Expect = 3e-11
Identities = 36/85 (42%), Positives = 53/85 (62%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+VRRDW L+ G F+L+QILS + +D + ++ +L+ + + + N + L IT
Sbjct: 1123 LDMVRRDWCPLSKNVGNFVLNQILSGKQREDVVLNLNEYLSDIGEKMKNNGITLDQFIIT 1182
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
KQLTK +EY+D Q HV VA RL
Sbjct: 1183 KQLTKAISEYSDIKGQPHVAVAQRL 1207
Score = 52.0 bits (119), Expect = 2e-05
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Frame = +2
Query: 290 DIVPYIICEDGTANSATQ-----RAYHIEELKNSE-HLKVDFKYYLAHQLHPVISRICEP 451
+ +PY+I S T +AYH EE+ +S+ + +D ++Y+ Q+ P I+R+ E
Sbjct: 1220 NFIPYVIGAQPFDPSKTNPALAGKAYHPEEVVSSKGKILLDIEWYITMQVLPPITRLIEH 1279
Query: 452 IEGMDPARVADCLGLDPSGTNKLLKEKPT 538
I+G+D VA CLG+DP EK T
Sbjct: 1280 IDGIDVEFVAQCLGVDPKKYKYHSSEKKT 1308
>UniRef50_O00874 Cluster: DNA polymerase alpha catalytic subunit;
n=32; Trypanosomatidae|Rep: DNA polymerase alpha
catalytic subunit - Leishmania donovani
Length = 1339
Score = 69.7 bits (163), Expect = 7e-11
Identities = 28/85 (32%), Positives = 57/85 (67%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMD 466
GD++PY+IC T + + +A+H+EE++ + L++D ++YL+ Q++P + R+CE I+G
Sbjct: 1069 GDLIPYVIC---TGDRLSDKAFHVEEVRQNSQLQIDSEWYLSVQIYPPVMRLCEHIQGFS 1125
Query: 467 PARVADCLGLDPSGTNKLLKEKPTT 541
A++++ +G+ KL +E+ T
Sbjct: 1126 NAQLSEAMGIACHTGAKLEEEEAET 1150
Score = 53.2 bits (122), Expect = 7e-06
Identities = 27/85 (31%), Positives = 47/85 (55%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+VRRDW L+ +LS++L+ + +D L+ + N++ + + + + L I+
Sbjct: 976 LDMVRRDWCPLSKCVCDSVLSRVLNAEGSEDILDYVMNYMRDVSEKVRAGRYTLDNFVIS 1035
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
K LTK P Y ++ H VALR+
Sbjct: 1036 KSLTKEPEAYRG-NSFPHATVALRM 1059
>UniRef50_A3QME0 Cluster: DNA polymerase; n=2; Euplotes|Rep: DNA
polymerase - Euplotes aediculatus
Length = 1404
Score = 68.5 bits (160), Expect = 2e-10
Identities = 31/69 (44%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = +2
Query: 296 VPYIICEDGTANSATQRAYHIEELKNSE-HLKVDFKYYLAHQLHPVISRICEPIEGMDPA 472
+PYIIC+ G A QRAY EE++ ++ +L++D+ +YL+ Q++P ISR+ E IEG+D
Sbjct: 1114 IPYIICQ-GEAKQYAQRAYLPEEIQKAQGNLQIDYDWYLSQQIYPPISRLIEHIEGIDGR 1172
Query: 473 RVADCLGLD 499
+ +C GLD
Sbjct: 1173 FICECFGLD 1181
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/104 (32%), Positives = 58/104 (55%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L +VRRDW L+ G ++L +ILS ++ D +++ + + D L N++ + IT
Sbjct: 1014 LXMVRRDWCPLSKAIGNYVLGEILSSKSQDXXQINLRAYFTDMXDKLKNNEIKMKDFIIT 1073
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDSKKATLCLTLYV 314
KQLT+ P+EY + T HV +A R+ + SK A ++Y+
Sbjct: 1074 KQLTRPPSEYNNPDTFPHVVIANRMIKE---QSKSANELTSMYI 1114
>UniRef50_A5DZ55 Cluster: DNA polymerase; n=5; Saccharomycetales|Rep:
DNA polymerase - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 1529
Score = 66.9 bits (156), Expect = 5e-10
Identities = 38/111 (34%), Positives = 61/111 (54%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+ RR++ QL+ E F+L +ILS P++ L + +L +++D +I N++P I
Sbjct: 1130 LDMRRREYCQLSKEISTFVLMKILSNADPEEALMDVYQYLEEMRDKIIANQVPAIKYKIN 1189
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDSKKATLCLTLYVKMEPLTQ 335
+L+K+P Y + VQVAL+L K G KA +T YV P +
Sbjct: 1190 TKLSKDPTSYPNGKNMPQVQVALKL--KNQGKVIKAGSVIT-YVITAPTAE 1237
Score = 44.4 bits (100), Expect = 0.003
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +2
Query: 248 IEVNSKNSRR-FKKGDIVPYIICEDGTAN---SATQRAYHIEELK-NSEHLKVDFKYYLA 412
+ + KN + K G ++ Y+I N S RA I++L L+ D YYL
Sbjct: 1210 VALKLKNQGKVIKAGSVITYVITAPTAENDTSSVADRARAIQDLLVQKTELRPDPTYYLE 1269
Query: 413 HQLHPVISRICEPIEGMDPARVADCLGLD 499
Q+ + R+ E I+ +D RVA LG+D
Sbjct: 1270 KQIFAPVERLLEKIDSVDMVRVATALGID 1298
>UniRef50_Q23AJ0 Cluster: DNA polymerase catalytic subunit; n=2;
cellular organisms|Rep: DNA polymerase catalytic subunit
- Tetrahymena thermophila SB210
Length = 1396
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
+D+VRRDW QL+ +AG IL IL ++ ++ L+ I+ +L +L DD+ + S IT
Sbjct: 1071 IDVVRRDWCQLSRDAGNKILEIILESKSSENMLDDIKKYLIQLNDDINQKNIKNSNYYIT 1130
Query: 183 KQLTKNPNEYADKHTQSHVQVALR 254
K+LTK ++Y +K+ HV VA R
Sbjct: 1131 KRLTKRVDQYGEKNL-PHVAVAQR 1153
Score = 34.3 bits (75), Expect = 3.3
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 344 RAYHIEE-LKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCL 490
+AY +E + S+ L++D +YY QL I R+ E IEG++ +A L
Sbjct: 1204 KAYSPQEFITQSKSLEIDLQYYKRFQLFEPIKRMLEVIEGINLQEIASIL 1253
>UniRef50_A7AR93 Cluster: DNA polymerase alpha subunit, putative; n=1;
Babesia bovis|Rep: DNA polymerase alpha subunit, putative
- Babesia bovis
Length = 1483
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDL--IGNKM-----P 161
LD +RRDWS L E G +L+ IL+++ D ++N + K+ + L + NK+ P
Sbjct: 1025 LDFIRRDWSILTKEVGNALLAIILNDKVNDPEELGVENTVEKIHETLRDVNNKIAEGNIP 1084
Query: 162 LSVLAITKQLTKNPNEYADKHTQSHVQVALRL 257
IT+QL KNP EY + HV VALR+
Sbjct: 1085 PKAWIITRQLAKNPQEYGQNNNLPHVTVALRM 1116
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = +2
Query: 317 DGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 496
D S RAY + E + + L+ D +YY QL P I R+C IEG DP ++A CL +
Sbjct: 1158 DVKLRSLCNRAYSLTEFQQ-KGLEPDIQYYKTQQLLPPILRLCGVIEGTDPQKLASCLQI 1216
Query: 497 DPSGTNKLL 523
+L
Sbjct: 1217 QDDVNRTIL 1225
>UniRef50_Q8TWJ5 Cluster: DNA polymerase; n=1; Methanopyrus
kandleri|Rep: DNA polymerase - Methanopyrus kandleri
Length = 830
Score = 63.7 bits (148), Expect = 5e-09
Identities = 34/85 (40%), Positives = 51/85 (60%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L++VRRDW+ +A E + +L +IL++ P+ L+ I L +LK + + LA+T
Sbjct: 667 LEVVRRDWAPIARETQRRVLKRILADNDPEAALKEIHEVLERLK----SGDVDIDELAVT 722
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
QLTK P+EY K HV+ ALRL
Sbjct: 723 SQLTKKPSEYVQK--GPHVRAALRL 745
Score = 34.7 bits (76), Expect = 2.5
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 454
G IV Y+I S + +AY +E L E + D YY+ HQ+ P + RI I
Sbjct: 756 GTIVRYVIVRG--PGSVSDKAYPVE-LVREEGKEPDVDYYIEHQILPAVERIMRAI 808
>UniRef50_Q5CU42 Cluster: DNA polymerase; n=2; Cryptosporidium|Rep:
DNA polymerase - Cryptosporidium parvum Iowa II
Length = 1488
Score = 63.3 bits (147), Expect = 6e-09
Identities = 34/85 (40%), Positives = 46/85 (54%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+VRRDWS L +L+ + S + D + +I N L L + L N +PL IT
Sbjct: 1082 LDLVRRDWSILTRNVSTQLLNLLFSNEPIDTVITNILNTLESLNEALNSNSIPLESFIIT 1141
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
K LTK P Y+D + HV VA R+
Sbjct: 1142 KTLTKLPQFYSDPYLLPHVIVAKRM 1166
Score = 59.7 bits (138), Expect = 8e-08
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 10/81 (12%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSA----------TQRAYHIEELKNSEHLKVDFKYYLAHQLHPVIS 436
G +PYIIC++ + S+ ++RAY EE+K S L +D ++Y QL P +S
Sbjct: 1176 GTEIPYIICKEVNSQSSDEVAPKSSMLSKRAYSPEEVK-SNGLNIDIEWYKTQQLLPPLS 1234
Query: 437 RICEPIEGMDPARVADCLGLD 499
R+C PI G++ +R+ CLGL+
Sbjct: 1235 RLCAPIPGLEISRIGQCLGLE 1255
>UniRef50_Q9Y1T1 Cluster: DNA polymerase; n=1; Toxoplasma gondii|Rep:
DNA polymerase - Toxoplasma gondii
Length = 1690
Score = 62.9 bits (146), Expect = 8e-09
Identities = 34/96 (35%), Positives = 49/96 (51%)
Frame = +2
Query: 332 SATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGLDPSGT 511
S +RA+H E+ + LK+D +YYL QL P I R+C +EG +R+A+CLGLD S
Sbjct: 1553 SPAERAFHPREVAGNPLLKIDAEYYLEQQLLPPIQRMCAFVEGTSASRLAECLGLDGSKH 1612
Query: 512 NKLLKEKPTTRKLMRSRTNKKSTDNAKSLSSNASMK 619
+L T R K + +L S + K
Sbjct: 1613 TRLEGTIGETDDCSRDAREKAGEERIMALISKSEEK 1648
>UniRef50_Q54SV8 Cluster: DNA polymerase; n=1; Dictyostelium
discoideum AX4|Rep: DNA polymerase - Dictyostelium
discoideum AX4
Length = 1509
Score = 62.9 bits (146), Expect = 8e-09
Identities = 31/88 (35%), Positives = 49/88 (55%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
+DIVRRD+ L + G+++L+ IL + I+ +L ++ + N + + IT
Sbjct: 1121 IDIVRRDYCDLTKDIGQWVLNLILGGEEKIALFSLIKEYLESVQQQIKDNTLAVEKFIIT 1180
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVK 266
K L+K P EY D Q HVQVAL++ K
Sbjct: 1181 KTLSKQPEEYNDADIQPHVQVALQMRAK 1208
>UniRef50_Q5B0J8 Cluster: DNA polymerase; n=28; Eukaryota|Rep: DNA
polymerase - Emericella nidulans (Aspergillus nidulans)
Length = 2019
Score = 61.3 bits (142), Expect = 3e-08
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Frame = +2
Query: 281 KKGDIVPYIICEDGTANSA---TQRAYHIEE-LKNSEHLKVDFKYYLAHQLHPVISRICE 448
+ D++ YI+ + S+ +R+Y +++ +K LK D ++YL Q+ P I R+C
Sbjct: 1164 RPNDVISYIVTSGDSETSSLPPAKRSYTLQDVIKPDSRLKPDIEFYLLKQIFPPIERLCA 1223
Query: 449 PIEGMDPARVADCLGLD 499
PI G D R+A+CLGLD
Sbjct: 1224 PIPGTDAVRLAECLGLD 1240
Score = 52.8 bits (121), Expect = 9e-06
Identities = 28/84 (33%), Positives = 48/84 (57%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+ RR++ L+ EA + +L++ILS + L + ++L +L ++ +P+ I
Sbjct: 1072 LDMKRREYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNMREYTIPVQKYVIY 1131
Query: 183 KQLTKNPNEYADKHTQSHVQVALR 254
+L+K P EY +K T QVALR
Sbjct: 1132 TKLSKRPEEYPNKETMPPAQVALR 1155
>UniRef50_A0D7P3 Cluster: DNA polymerase; n=1; Paramecium
tetraurelia|Rep: DNA polymerase - Paramecium tetraurelia
Length = 1344
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/67 (37%), Positives = 44/67 (65%)
Frame = +2
Query: 296 VPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPAR 475
+ Y+ICED T + + RAY ++EL N ++L +D+ YYL+ Q+ I R+C+ ++ + +
Sbjct: 1083 IRYVICEDPTQKNLSFRAYTVDELIN-KNLTIDYYYYLSTQIFDPIVRLCKNVQVISISE 1141
Query: 476 VADCLGL 496
+A LGL
Sbjct: 1142 LAQILGL 1148
Score = 43.6 bits (98), Expect = 0.005
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDD---RLESIQNHLNKLKDDLIGN------- 152
+DIVRR++ ++ + +L +L + DD L ++ + + D L GN
Sbjct: 963 IDIVRREFCDISKKMQSHVLDILLKTKNRDDIHGDLITLMQEIRSMFDALSGNSNADPKQ 1022
Query: 153 ----------KMPLSVLAITKQLTKNPNEYADKHTQSHVQVALRLTVKTVGDSKKATLCL 302
++P S I KQL K P+EY+D + HVQVALR+ + ++
Sbjct: 1023 LIAQNRFITYEIPTSDFIIVKQLNKAPHEYSDTISAPHVQVALRMVNEYGRSAQSLVNHF 1082
Query: 303 TLYVKMEPLTQ 335
YV E TQ
Sbjct: 1083 IRYVICEDPTQ 1093
>UniRef50_O33845 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu)
[Contains: Tag pol-1 intein (Tsp-TY pol-1) (Intein I);
Tag pol-2 intein (Tsp-TY pol-2) (Intein II); Tag pol-3
intein (Tsp-TY pol-3) (Intein III)]; n=6; cellular
organisms|Rep: DNA polymerase (EC 2.7.7.7) (Pol Tfu)
[Contains: Tag pol-1 intein (Tsp-TY pol-1) (Intein I);
Tag pol-2 intein (Tsp-TY pol-2) (Intein II); Tag pol-3
intein (Tsp-TY pol-3) (Intein III)] - Thermococcus
aggregans
Length = 1829
Score = 53.6 bits (123), Expect = 5e-06
Identities = 30/90 (33%), Positives = 53/90 (58%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L++VRRDWS++A E +L IL E + + +E +++ + +++ ++PL L I
Sbjct: 1666 LEVVRRDWSEIAKETQAKVLEAILKEDSVEKAVEIVKD----VVEEIAKYQVPLEKLVIH 1721
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTV 272
+Q+TK+ +EY K HV +A RL K +
Sbjct: 1722 EQITKDLSEY--KAIGPHVAIAKRLAAKGI 1749
>UniRef50_UPI0000499846 Cluster: DNA polymerase alpha catalytic
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep: DNA
polymerase alpha catalytic subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1132
Score = 53.2 bits (122), Expect = 7e-06
Identities = 29/95 (30%), Positives = 55/95 (57%)
Frame = +2
Query: 263 KNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 442
K+S+ +K GD V Y+I + S++ R+ ++ ++ E + D++YYL Q++ +SR+
Sbjct: 893 KSSKHYKAGDQVKYLIEKGDNTKSSSDRSIPLDVVEKLEKFEPDYEYYLDTQIYAPVSRL 952
Query: 443 CEPIEGMDPARVADCLGLDPSGTNKLLKEKPTTRK 547
E M+ ++ + LGL+P+ TN + TT K
Sbjct: 953 FEVFPRMN-IKIREWLGLNPT-TNLYSRIAVTTNK 985
Score = 50.0 bits (114), Expect = 6e-05
Identities = 27/84 (32%), Positives = 43/84 (51%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+VRR+W L+ E G + + ILS+ + ++ + + + L K+ + L IT
Sbjct: 812 LDVVRREWCPLSKEIGYYCIDLILSDPGLVKMQQILEIYFKNMAEKLRSGKVDIHQLVIT 871
Query: 183 KQLTKNPNEYADKHTQSHVQVALR 254
K L K+P Y K HV AL+
Sbjct: 872 KGLNKDPQSYPQK--TDHVAAALK 893
>UniRef50_A3QME1 Cluster: DNA polymerase; n=1; Eschaneustyla sp.
WJC-2005|Rep: DNA polymerase - Eschaneustyla sp. WJC-2005
Length = 1548
Score = 53.2 bits (122), Expect = 7e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+VRR+W L+ + F+L QILS + +D + + +L+++ + + L IT
Sbjct: 1145 LDMVRREWCALSKKVSGFVLDQILSGKQREDVVLQLNEYLSEVGRKMKESSYNLGEFIIT 1204
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDS 281
KQL + +Y + HV VA RL + +S
Sbjct: 1205 KQLNRALKDYQNSKGLPHVAVAKRLAAQGKNES 1237
Score = 52.8 bits (121), Expect = 9e-06
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Frame = +2
Query: 290 DIVPYIICEDGTANSATQ-RAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEGM 463
+ + Y+IC+ NS + +AY +E N ++ L++D +Y+ Q+ P I+R+ E I+G+
Sbjct: 1240 NFIKYVICKIEKDNSTLEEKAYTPDEFLNKKNNLQLDLDWYIQQQILPPITRLIEHIDGI 1299
Query: 464 DPARVADCLGLDP 502
+ VA CLG+DP
Sbjct: 1300 EIDFVAQCLGVDP 1312
>UniRef50_A0B8Z8 Cluster: DNA polymerase; n=1; Methanosaeta
thermophila PT|Rep: DNA polymerase - Methanosaeta
thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 941
Score = 52.0 bits (119), Expect = 2e-05
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKD-DLIGNKMPLSVLAI 179
++ VRRDW L ++ + L IL E DD ++ +++ + +L+D D+ ++ L L +
Sbjct: 761 METVRRDWCDLTSKTLRRCLELILKEGRVDDAVQHVRDVIQRLRDMDIRRDRELLDDLVL 820
Query: 180 TKQLTKNPNEYADKHTQSHVQVALRL 257
T++ TK+P+ Y +K Q H+Q+ ++
Sbjct: 821 TRRFTKDPSSYRNK--QPHIQLVEKM 844
>UniRef50_P13382 Cluster: DNA polymerase alpha catalytic subunit A;
n=6; Saccharomycetales|Rep: DNA polymerase alpha
catalytic subunit A - Saccharomyces cerevisiae (Baker's
yeast)
Length = 1468
Score = 50.4 bits (115), Expect = 5e-05
Identities = 28/104 (26%), Positives = 55/104 (52%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
LD+ RR++ L+ + +L+ ILS++ P++ L+ + ++L ++ + N + + I
Sbjct: 1071 LDMKRREFCPLSRDVSIHVLNTILSDKDPEEALQEVYDYLEDIRIKVETNNIRIDKYKIN 1130
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDSKKATLCLTLYV 314
+L+K+P Y VQVALR+ + G KA +T +
Sbjct: 1131 MKLSKDPKAYPGGKNMPAVQVALRM--RKAGRVVKAGSVITFVI 1172
Score = 40.7 bits (91), Expect = 0.038
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Frame = +2
Query: 263 KNSRRFKKGDIVPYIICE--------DGTANSATQRAYHIEELK-NSEHLKVDFKYYLAH 415
K R K G ++ ++I + D A S +RA+ + E+ S +L D +YYL
Sbjct: 1157 KAGRVVKAGSVITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIPDPQYYLEK 1216
Query: 416 QLHPVISRICEPIEGMDPARVADCLGLD 499
Q+ + R+ E I+ + R+++ LGLD
Sbjct: 1217 QIFAPVERLLERIDSFNVVRLSEALGLD 1244
>UniRef50_Q0W0J7 Cluster: DNA-directed DNA polymerase B; n=1;
uncultured methanogenic archaeon RC-I|Rep: DNA-directed
DNA polymerase B - Uncultured methanogenic archaeon RC-I
Length = 798
Score = 49.6 bits (113), Expect = 8e-05
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L++ R DW ++A E ++ IL E+ PD + +++ + K+K K+PL L I
Sbjct: 628 LEVRRGDWCEIAKELQSEVIRIILEEENPDKAAKFVKDTVQKVK----SGKVPLDALVIH 683
Query: 183 KQLTKNPNEYADKHTQSHVQVALR 254
K LTK+ Y + Q+HV+ A R
Sbjct: 684 KTLTKSVTRY--ESAQAHVKAAER 705
>UniRef50_P30317 Cluster: DNA polymerase (EC 2.7.7.7) (Vent DNA
polymerase) [Contains: Endonuclease PI-TliII (EC 3.1.-.-)
(Tli pol-1 intein) (IVPS2); Endonuclease PI-TliI (EC
3.1.-.-) (Tli pol-2 intein) (IVPS1)]; n=8;
Thermococcaceae|Rep: DNA polymerase (EC 2.7.7.7) (Vent
DNA polymerase) [Contains: Endonuclease PI-TliII (EC
3.1.-.-) (Tli pol-1 intein) (IVPS2); Endonuclease PI-TliI
(EC 3.1.-.-) (Tli pol-2 intein) (IVPS1)] - Thermococcus
litoralis
Length = 1702
Score = 49.6 bits (113), Expect = 8e-05
Identities = 28/90 (31%), Positives = 51/90 (56%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L++VRRDWS++A E +L IL E + + +E +++ + K+ ++PL L I
Sbjct: 1539 LEVVRRDWSEIAKETQAKVLEAILKEGSVEKAVEVVRDVVEKIAK----YRVPLEKLVIH 1594
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTV 272
+Q+T++ +Y K HV +A RL + +
Sbjct: 1595 EQITRDLKDY--KAIGPHVAIAKRLAARGI 1622
>UniRef50_P52431 Cluster: DNA polymerase delta catalytic subunit;
n=50; root|Rep: DNA polymerase delta catalytic subunit -
Mus musculus (Mouse)
Length = 1105
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/93 (34%), Positives = 51/93 (54%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+ VRRD L A L +IL ++ PD + H + DL+ N++ +S L IT
Sbjct: 827 LEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVA----HAKDVISDLLCNRIDISQLVIT 882
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDS 281
K+LT+ +YA K Q+HV++A R+ + G +
Sbjct: 883 KELTRAAADYAGK--QAHVELAERMRKRDPGSA 913
Score = 35.1 bits (77), Expect = 1.9
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEG 460
GD VPY+I G A + L EH L +D +YYL QL + RI EPI G
Sbjct: 917 GDRVPYVII--GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 973
>UniRef50_P90829 Cluster: DNA polymerase delta catalytic subunit; n=8;
root|Rep: DNA polymerase delta catalytic subunit -
Caenorhabditis elegans
Length = 1081
Score = 48.4 bits (110), Expect = 2e-04
Identities = 30/95 (31%), Positives = 55/95 (57%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+ VRRD L A+ L ++L E+ L+ + ++ DL+ NK+ +S+L I+
Sbjct: 799 LETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTIS----DLLCNKIDISLLIIS 854
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDSKK 287
K+LTK+ ++Y K Q+HV++A R+ + G + +
Sbjct: 855 KELTKSGDKYQAK--QAHVELAARMKKRDAGSAPR 887
>UniRef50_Q6C675 Cluster: DNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA polymerase - Yarrowia lipolytica
(Candida lipolytica)
Length = 1375
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/73 (30%), Positives = 43/73 (58%)
Frame = +2
Query: 281 KKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEG 460
++GD++ ++I G+ SA + +L + L+ D +YY++ QL+P I R+ + G
Sbjct: 1105 REGDVMSFVITTVGSDESAKAQTTMDVKLSRGK-LQPDAEYYISKQLYPQIERLLAHVTG 1163
Query: 461 MDPARVADCLGLD 499
DP R+ + LG++
Sbjct: 1164 TDPVRLGEVLGIE 1176
Score = 40.7 bits (91), Expect = 0.038
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKM-------P 161
LD+ RR+ Q++ +A ++L Q+L + L ++ +L +L + L + P
Sbjct: 1007 LDLRRRETCQISKDACTYVLEQVLGPDDQETALNNVHEYLFELAEKLRSGPVKDESAPFP 1066
Query: 162 LSVLAITKQLTKNPNEYADKHTQSHVQVALR 254
+ AI KQL K+P Y + Q V VALR
Sbjct: 1067 VEHYAILKQLGKDPKAY-NPPIQPFVAVALR 1096
>UniRef50_P52025 Cluster: DNA polymerase; n=6; Methanococcus|Rep:
DNA polymerase - Methanococcus voltae
Length = 824
Score = 48.0 bits (109), Expect = 3e-04
Identities = 33/93 (35%), Positives = 53/93 (56%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L++VRRDWS +A + + ++ +L + + + I+N ++ LK GN + + L I
Sbjct: 668 LEVVRRDWSNIAKDTQQAVIRALLEDGDVNLAKKIIKNTIDNLKK---GN-IDKNDLLIH 723
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDS 281
QLTKN EY K T H++VA + +K GDS
Sbjct: 724 TQLTKNIEEY--KSTAPHIEVAKK--IKQRGDS 752
>UniRef50_Q308M6 Cluster: DNA polymerase; n=1; Homo sapiens|Rep: DNA
polymerase - Homo sapiens (Human)
Length = 1133
Score = 47.6 bits (108), Expect = 3e-04
Identities = 30/93 (32%), Positives = 54/93 (58%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+ VRRD L A L ++L ++ P+ + Q+ ++ DL+ N++ +S L IT
Sbjct: 855 LEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVIS----DLLCNRIDISQLVIT 910
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDS 281
K+LT+ ++YA K Q+HV++A R+ + G +
Sbjct: 911 KELTRAASDYAGK--QAHVELAERMRKRDPGSA 941
Score = 34.3 bits (75), Expect = 3.3
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEG 460
GD VPY+I +A ++ + L EH L +D +YYL QL + RI EPI G
Sbjct: 945 GDRVPYVIISAAKGVAAYMKSE--DPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 1001
>UniRef50_Q58295 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: Mja
pol-1 intein; Mja pol-2 intein]; n=1; Methanocaldococcus
jannaschii|Rep: DNA polymerase (EC 2.7.7.7) [Contains:
Mja pol-1 intein; Mja pol-2 intein] - Methanococcus
jannaschii
Length = 1634
Score = 47.6 bits (108), Expect = 3e-04
Identities = 30/85 (35%), Positives = 47/85 (55%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+ VRRDWS +A + +L +L E + + + IQ+ + L++ K+ L I
Sbjct: 1475 LEFVRRDWSNIAKITQRRVLEALLVEGSIEKAKKIIQDVIKDLRE----KKIKKEDLIIY 1530
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
QLTK+P EY K T HV++A +L
Sbjct: 1531 TQLTKDPKEY--KTTAPHVEIAKKL 1553
Score = 37.1 bits (82), Expect = 0.47
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +2
Query: 263 KNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 442
+ +R K GDI+ YII + GT S ++RA EE+ + +D YY+ +Q+ P + RI
Sbjct: 1555 REGKRIKVGDIIGYIIVK-GT-KSISERAKLPEEVDIDD---IDVNYYIDNQILPPVLRI 1609
Query: 443 CEPI 454
E +
Sbjct: 1610 MEAV 1613
>UniRef50_P28340 Cluster: DNA polymerase delta catalytic subunit;
n=36; Eukaryota|Rep: DNA polymerase delta catalytic
subunit - Homo sapiens (Human)
Length = 1107
Score = 47.6 bits (108), Expect = 3e-04
Identities = 30/93 (32%), Positives = 54/93 (58%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+ VRRD L A L ++L ++ P+ + Q+ ++ DL+ N++ +S L IT
Sbjct: 829 LEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVIS----DLLCNRIDISQLVIT 884
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDS 281
K+LT+ ++YA K Q+HV++A R+ + G +
Sbjct: 885 KELTRAASDYAGK--QAHVELAERMRKRDPGSA 915
Score = 34.3 bits (75), Expect = 3.3
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEG 460
GD VPY+I +A ++ + L EH L +D +YYL QL + RI EPI G
Sbjct: 919 GDRVPYVIISAAKGVAAYMKSE--DPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975
>UniRef50_O59610 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: Pho
pol intein (Pho Pol I intein)]; n=11; Archaea|Rep: DNA
polymerase (EC 2.7.7.7) [Contains: Pho pol intein (Pho
Pol I intein)] - Pyrococcus horikoshii
Length = 1235
Score = 47.2 bits (107), Expect = 4e-04
Identities = 30/90 (33%), Positives = 49/90 (54%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+IVRRDWS++A E +L IL ++ ++ +++ KL + ++P L I
Sbjct: 1069 LEIVRRDWSEIAKETQARVLEAILKHGNVEEAVKIVKDVTEKLTN----YEVPPEKLVIY 1124
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTV 272
+Q+T+ NEY K HV VA RL + +
Sbjct: 1125 EQITRPINEY--KAIGPHVAVAKRLMARGI 1152
>UniRef50_Q9TX75 Cluster: DNA polymerase alpha, DNAPOL alpha; n=10;
Plasmodium|Rep: DNA polymerase alpha, DNAPOL alpha -
Plasmodium falciparum
Length = 1855
Score = 46.0 bits (104), Expect = 0.001
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPD----------DRLESIQNHLNKLKDDLIGN 152
++ ++RD+S+++ G +L I + + D D E I +L + + +
Sbjct: 1321 INFIKRDFSKISKLIGNEVLRIIFTNRDVDSKNIPVPLENDLSEQIHEYLRTINQRIQND 1380
Query: 153 KMPLSVLAITKQLTKNPNEYADKHTQSHVQVALRL 257
+ L ITK+LTKN +EY DK++ HV VA R+
Sbjct: 1381 EFDLDYYIITKKLTKNVHEYQDKNSLGHVLVAERM 1415
Score = 39.9 bits (89), Expect = 0.067
Identities = 17/53 (32%), Positives = 33/53 (62%)
Frame = +2
Query: 338 TQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 496
+Q + I E+K +LK+D +YY+ +Q+ I+R+C+ IEG +++ C +
Sbjct: 1452 SQCCFSINEIKKY-NLKIDKEYYIRNQILSPINRLCQYIEGTSAEKLSSCFNI 1503
>UniRef50_P74918 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu)
[Contains: Endonuclease PI-TfuI (EC 3.1.-.-) (Tfu pol-1
intein); Endonuclease PI-TfuII (EC 3.1.-.-) (Tfu pol-2
intein)]; n=1; Thermococcus fumicolans|Rep: DNA
polymerase (EC 2.7.7.7) (Pol Tfu) [Contains: Endonuclease
PI-TfuI (EC 3.1.-.-) (Tfu pol-1 intein); Endonuclease
PI-TfuII (EC 3.1.-.-) (Tfu pol-2 intein)] - Thermococcus
fumicolans
Length = 1523
Score = 44.4 bits (100), Expect = 0.003
Identities = 28/90 (31%), Positives = 46/90 (51%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+IVRRDWS++A E +L IL ++ + ++ KL ++P L I
Sbjct: 1357 LEIVRRDWSEVAKETQARVLEAILRHGDVEEAVRIVKEVTEKLSK----YEVPPEKLVIH 1412
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTV 272
+Q+T+ +Y K T HV +A RL + +
Sbjct: 1413 EQITRELKDY--KATGPHVAIAKRLAARGI 1440
>UniRef50_Q8SRW2 Cluster: DNA polymerase; n=1; Encephalitozoon
cuniculi|Rep: DNA polymerase - Encephalitozoon cuniculi
Length = 956
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/75 (25%), Positives = 41/75 (54%)
Frame = +2
Query: 275 RFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 454
+F++GD+V Y+I + + +RAYH +E +D+ YY++ Q+ P + R+ +
Sbjct: 748 KFEQGDVVCYVIGKGDPGQAIHKRAYHPDE-----DFAIDYGYYISSQILPPLLRVVGIV 802
Query: 455 EGMDPARVADCLGLD 499
+G ++ G++
Sbjct: 803 KGFHAGKIGKIFGVE 817
>UniRef50_A5KAH7 Cluster: DNA polymerase; n=1; Plasmodium vivax|Rep:
DNA polymerase - Plasmodium vivax
Length = 1707
Score = 42.7 bits (96), Expect = 0.010
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 90 DDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHVQVALRL 257
+D E I +L + ++ ++ L ITK+LTKN +EY +K++ HV VA R+
Sbjct: 1270 NDLSEQIHEYLRGVHQRILADEFDLDFFTITKKLTKNVSEYQEKNSLGHVLVAERM 1325
Score = 36.7 bits (81), Expect = 0.63
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 371 NSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 496
+ +L+VD YY+ +Q+ I+R+C+ IEG ++A C +
Sbjct: 1373 HKHNLRVDKDYYIRNQILSPINRLCQYIEGTSAEKLASCFNI 1414
>UniRef50_UPI0000499E46 Cluster: DNA polymerase delta catalytic
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep: DNA
polymerase delta catalytic subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1077
Score = 41.9 bits (94), Expect = 0.017
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
++ VRRD L K+++ +L++ D +E + + + DL+ NK+ LS+L I+
Sbjct: 807 IETVRRDNCLLV----KYVIENVLNKILLDSDVEGAISFVKNMISDLLQNKLDLSMLIIS 862
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
K L+K +YA K Q+HV++ R+
Sbjct: 863 KTLSK--EDYAGK--QAHVELVKRI 883
Score = 36.3 bits (80), Expect = 0.83
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEG 460
GD +PY+I + A ++A + L+N+ + +DF YY+ +QL ++RI +PI G
Sbjct: 895 GDRIPYVIIKSTKDAKAYEKAEDPLYVLENN--IPIDFDYYIENQLKKPLTRIFKPILG 951
>UniRef50_A7QST5 Cluster: Chromosome chr4 scaffold_162, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_162, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1126
Score = 41.5 bits (93), Expect = 0.022
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
++ VRRD L K L +IL ++ ++ ++N + DL+ N+M LS+L IT
Sbjct: 855 IETVRRDNCLLVKNLVKECLHKILIDRDIPGAVQYVKNTIA----DLLMNRMDLSLLVIT 910
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
K LTK ++Y K +HV++A R+
Sbjct: 911 KGLTKTGDDYEVK--AAHVELAERM 933
Score = 36.7 bits (81), Expect = 0.63
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGM 463
GD VPY+I + A +R+ I L+N+ + +D +YYL +Q+ + RI EPI
Sbjct: 945 GDRVPYVIIKAAKGAKAYERSEDPIYVLENN--IPIDPQYYLENQISKPLLRIFEPI--- 999
Query: 464 DPARVADCLGLDPSGTNKLLKEKPTTRKLMRSRTNKKSTDNAKSLSSNASMKL 622
+ A L S T + P+ +M+ + S K+L SN L
Sbjct: 1000 --LKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALISNTDRTL 1050
>UniRef50_A5UNA8 Cluster: DNA-directed DNA polymerase, family B,
PolB; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-directed DNA polymerase, family B, PolB -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 227
Score = 41.1 bits (92), Expect = 0.029
Identities = 27/85 (31%), Positives = 42/85 (49%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L++VRRDW+ + + K +L IL E + +++ L +LK I K L I
Sbjct: 66 LELVRRDWAPIVKQTQKDVLKDILKEGNTTKAINTVKKVLKRLKTGKIEGK----ELIIH 121
Query: 183 KQLTKNPNEYADKHTQSHVQVALRL 257
Q+TK +EY K HV A ++
Sbjct: 122 TQITKPLSEY--KQIGPHVVAAKKM 144
>UniRef50_A6DKJ0 Cluster: DNA polymerase II; n=1; Lentisphaera
araneosa HTCC2155|Rep: DNA polymerase II - Lentisphaera
araneosa HTCC2155
Length = 753
Score = 40.7 bits (91), Expect = 0.038
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+ VRRDW++LA + +L +I ++++ D SI+ + +L +DL + +L
Sbjct: 613 LEAVRRDWTELARQLQSDLLEKIFNQESAD----SIETFIQELINDLNQGSLD-HLLTYR 667
Query: 183 KQLTKNPNEYADKHTQSHVQVA 248
K+LTK P E + T HV+ A
Sbjct: 668 KRLTK-PLESYTRTTPPHVKAA 688
>UniRef50_A6R857 Cluster: DNA polymerase; n=1; Ajellomyces capsulatus
NAm1|Rep: DNA polymerase - Ajellomyces capsulatus NAm1
Length = 1086
Score = 40.7 bits (91), Expect = 0.038
Identities = 28/93 (30%), Positives = 51/93 (54%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
++ VRRD ++ + +L +IL ++ D Q+++ DL+ NK+ +S L IT
Sbjct: 808 IETVRRDNCRMVQTVIETVLRKILIDRDVD----GAQSYVKDTISDLLQNKIDMSKLVIT 863
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDS 281
K L+K +Y K Q+HV++A R+ + G +
Sbjct: 864 KALSK--KDYTAK--QAHVELAERMKKRDAGSA 892
Score = 33.5 bits (73), Expect = 5.8
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEG 460
GD V Y+I + + +++ I L+N+ + +D KYYL +QL ++RI EPI G
Sbjct: 896 GDRVAYVIVKGAGGSKNYEKSEDPIYVLENN--IPIDTKYYLDNQLAKPLTRIFEPILG 952
>UniRef50_O93745 Cluster: DNA polymerase 1; n=1; Aeropyrum pernix|Rep:
DNA polymerase 1 - Aeropyrum pernix
Length = 959
Score = 40.3 bits (90), Expect = 0.051
Identities = 22/67 (32%), Positives = 38/67 (56%)
Frame = +3
Query: 57 ILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSH 236
ILS++ + + L +++H+N + +++ L AI L+KNP EY DK+T H
Sbjct: 819 ILSKLEKPEDVEAILAELRDHINTVYNNVKKKVYTLDQFAIKVMLSKNPREY-DKNTPQH 877
Query: 237 VQVALRL 257
V+ A+ L
Sbjct: 878 VKAAMLL 884
>UniRef50_Q4Y991 Cluster: DNA polymerase; n=9; Plasmodium
(Vinckeia)|Rep: DNA polymerase - Plasmodium chabaudi
Length = 1674
Score = 39.9 bits (89), Expect = 0.067
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +3
Query: 90 DDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHVQVALRL 257
+D E I +L + + ++ L ITK+LTKN +EY +K++ HV VA R+
Sbjct: 1213 NDLSEQIHEYLRSIYHRIQNDEFDLEHYVITKKLTKNVHEYQEKNSLGHVLVAERM 1268
Score = 39.1 bits (87), Expect = 0.12
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = +2
Query: 350 YHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 496
+ I E+K +LK+D YY+ +Q+ I+R+CE IEG + +++ C +
Sbjct: 1309 FSISEIKKY-NLKIDKDYYIRNQILLPINRLCEYIEGTNVEKISSCFNI 1356
>UniRef50_Q5CWN2 Cluster: DNA polymerase; n=3; Cryptosporidium|Rep:
DNA polymerase - Cryptosporidium parvum Iowa II
Length = 1084
Score = 39.5 bits (88), Expect = 0.089
Identities = 28/93 (30%), Positives = 51/93 (54%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
++ VRRD L + +L +IL D +E+ + + + DL+ NK+ LS+L ++
Sbjct: 814 IETVRRDNCLLVQKVVDTVLKKILV----DKDVEAAKQYTRNVISDLLKNKIDLSLLVVS 869
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDS 281
K L K ++Y K +HV++A RL ++ G +
Sbjct: 870 KSLGK--DDYTAK--LAHVELAKRLKLRDPGSA 898
>UniRef50_A7EFB8 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 1430
Score = 38.7 bits (86), Expect = 0.16
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 442
G+ VPY++ R E+L NS+H ++D +YY++ L P + RI
Sbjct: 1220 GERVPYVVVTGAPGARLIDRCVAPEDLLNSDHSELDAEYYISKNLIPPLERI 1271
>UniRef50_Q0V5M4 Cluster: DNA polymerase; n=2; Pezizomycotina|Rep: DNA
polymerase - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1702
Score = 37.1 bits (82), Expect = 0.47
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 442
G+ VPYI+ R E L ++HL++D +YY++ L P + RI
Sbjct: 1462 GERVPYIVITGAPGARLIDRCVSPETLLQNDHLELDAEYYISKNLIPPLERI 1513
>UniRef50_A2FME7 Cluster: DNA polymerase; n=1; Trichomonas vaginalis
G3|Rep: DNA polymerase - Trichomonas vaginalis G3
Length = 1378
Score = 36.7 bits (81), Expect = 0.63
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGN 152
LD+VRRDW L F++S + + DD +E I N + ++ L N
Sbjct: 950 LDMVRRDWCFLTRYLSYFVISTFMFGENSDDSIEKILNEMERVAAMLRNN 999
Score = 33.5 bits (73), Expect = 5.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 392 DFKYYLAHQLHPVISRICEPIEGMDPARVADCLGL 496
D ++Y+ +Q+ + R+CEP GM+ +A LG+
Sbjct: 1126 DIEWYITNQIFNPVWRLCEPFGGMEKGMLAKALGV 1160
>UniRef50_A2DY14 Cluster: DNA polymerase; n=2; Trichomonas
vaginalis|Rep: DNA polymerase - Trichomonas vaginalis G3
Length = 1045
Score = 36.7 bits (81), Expect = 0.63
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 281 KKGDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIE 457
+ GD +P+++C+ G +++ I L++S + +D KYYL +QL ++R+ PI
Sbjct: 848 RMGDRIPFVMCDVGNGAKGYEKSEDPIWALEHS--IPIDTKYYLENQLSGPLNRLFGPII 905
Query: 458 GMDPAR 475
G + +
Sbjct: 906 GEEKVK 911
>UniRef50_Q8TSB3 Cluster: DNA polymerase; n=4;
Methanosarcinaceae|Rep: DNA polymerase - Methanosarcina
acetivorans
Length = 937
Score = 36.7 bits (81), Expect = 0.63
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKD-DLIGNKMPLSVLAI 179
++ VRRDW +L + +L +L E D +E ++ ++ +++ D + + L +
Sbjct: 724 METVRRDWCELTSITLNRVLEFVLIEGDVDKAVEHVRKVVSDVRNLDPGKDAGIIEKLVL 783
Query: 180 TKQLTKNPNEYADKHTQSHVQVALRLTVKT 269
T+ LT+ + Y K+ Q H+ VA L +T
Sbjct: 784 TRTLTRKADSY--KNKQPHLTVAENLKKRT 811
>UniRef50_UPI00006CB5C2 Cluster: hypothetical protein
TTHERM_00535840; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00535840 - Tetrahymena
thermophila SB210
Length = 1433
Score = 36.3 bits (80), Expect = 0.83
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +2
Query: 530 KPTTRKLMRSRTNKKSTDNAKSLSSNASMKL*NFEQSTRIDL*TGQRDISFLDRCQNEKC 709
K ++ R K + +K L + K+ N +QST I+ Q+DI F CQN +
Sbjct: 113 KKKNKRQKRKALKDKLQNISKQLHLSFHSKMNNLQQSTEIENKNDQKDILF--TCQNSQG 170
Query: 710 NVKPLDYLSSVQN 748
N +YL + QN
Sbjct: 171 NNSYAEYLKNKQN 183
>UniRef50_Q2H423 Cluster: DNA polymerase; n=6; Pezizomycotina|Rep: DNA
polymerase - Chaetomium globosum (Soil fungus)
Length = 1755
Score = 36.3 bits (80), Expect = 0.83
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 442
G+ VPY++ R E+L N H +D +YY++ L P + RI
Sbjct: 1512 GERVPYVVVSGAPGARLIDRCVAPEDLLNDPHASLDAEYYISKNLIPPLERI 1563
>UniRef50_Q8I5I1 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1560
Score = 35.9 bits (79), Expect = 1.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 511 KQAVKRETNDSETYEVENEQEKYRQCKEFVFECVDE 618
K +KR N+ + +NE KY C+EF+FE V++
Sbjct: 138 KNYLKRILNNDNVLDDKNENVKYSSCQEFIFEAVEQ 173
>UniRef50_Q22HL1 Cluster: DNA polymerase family B containing protein;
n=12; root|Rep: DNA polymerase family B containing
protein - Tetrahymena thermophila SB210
Length = 1124
Score = 35.9 bits (79), Expect = 1.1
Identities = 26/65 (40%), Positives = 31/65 (47%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
++ VRRD Q E L IL E D SIQ + DL NK+ +S L IT
Sbjct: 821 MENVRRDNCQFIREMMNTCLRYILVEHKQDGVQRSIQ-FIKGCISDLYQNKVDISKLVIT 879
Query: 183 KQLTK 197
K LTK
Sbjct: 880 KSLTK 884
>UniRef50_A2DDR9 Cluster: DNA polymerase; n=1; Trichomonas vaginalis
G3|Rep: DNA polymerase - Trichomonas vaginalis G3
Length = 1367
Score = 35.9 bits (79), Expect = 1.1
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNK 128
LD+VRRDW QL F+L Q+++ DDR +++N L++
Sbjct: 924 LDMVRRDWCQLTKYLSSFVLDQMMNN---DDRSLTVRNCLSE 962
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 153 KMPLSVLAITKQLTKNPNEYADKHTQSHVQVALRL 257
K+ +L I +QL K +EY+DK HV +ALR+
Sbjct: 1114 KITKEMLIIYRQLNKKISEYSDKRNNPHVSIALRM 1148
>UniRef50_Q8SQP5 Cluster: DNA polymerase; n=1; Encephalitozoon
cuniculi|Rep: DNA polymerase - Encephalitozoon cuniculi
Length = 974
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 454
GD VPY+I +A +++ + L+N+ L +D +YY++ Q+ +SRI EPI
Sbjct: 796 GDRVPYVIVRKEKGAAAHEKSEDPVYVLENN--LPIDTEYYISQQISKPLSRIFEPI 850
>UniRef50_Q7QQB5 Cluster: DNA polymerase; n=2; Giardia
intestinalis|Rep: DNA polymerase - Giardia lamblia ATCC
50803
Length = 1730
Score = 35.1 bits (77), Expect = 1.9
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 389 VDFKYYLAHQLHPVISRICEPIEGMDPARVADCLGLD 499
+D ++Y+ Q+ P + R+C + + ++A+C GLD
Sbjct: 1417 LDIEWYIKSQIIPPLQRVCSYVPDLSAGQLAECFGLD 1453
>UniRef50_Q27RS8 Cluster: DNA polymerase; n=36; Neurospora|Rep: DNA
polymerase - Neurospora crassa
Length = 1926
Score = 35.1 bits (77), Expect = 1.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 442
G+ VPY++ R EEL N+ H +D YY+ + P + RI
Sbjct: 1572 GERVPYVVMAGAPGLRLVDRCVEPEELLNNAHATLDADYYINKNIIPPLERI 1623
>UniRef50_A3DMW2 Cluster: DNA polymerase; n=1; Staphylothermus
marinus F1|Rep: DNA polymerase - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 855
Score = 35.1 bits (77), Expect = 1.9
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +3
Query: 57 ILSQILSEQTPDDRLES---IQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHT 227
++ ++ + TP+D E ++N + +L +L ++ L LA LTK+ NEY K+
Sbjct: 713 LIEKLKAMSTPEDFKEFQEWLENEVKRLYRELKKKEITLDQLAFKVGLTKSLNEYT-KNK 771
Query: 228 QSHVQVALRLTVKTVG 275
HV+ AL+L KT G
Sbjct: 772 PPHVKAALQL--KTYG 785
>UniRef50_Q57YY4 Cluster: DNA polymerase zeta catalytic subunit,
putative; n=1; Trypanosoma brucei|Rep: DNA polymerase
zeta catalytic subunit, putative - Trypanosoma brucei
Length = 1958
Score = 34.7 bits (76), Expect = 2.5
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 227 AISRPSGIEVNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSE-HLKVDFKY 403
A +R + + V R G+ +P+++ + + R H ++L + E HL +D +Y
Sbjct: 1633 AAARLAALLVEKDAMRTPYWGERIPFVVIRRPESTRLSDRVVHPQQLLSDEDHLMLDSEY 1692
Query: 404 YLAHQLHPVISRI 442
Y+ + P + R+
Sbjct: 1693 YITRHIVPTLDRM 1705
>UniRef50_O76329 Cluster: Interaptin; n=2; Dictyostelium
discoideum|Rep: Interaptin - Dictyostelium discoideum
(Slime mold)
Length = 1738
Score = 34.7 bits (76), Expect = 2.5
Identities = 28/88 (31%), Positives = 47/88 (53%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L +++D +QL E + + LSE+ D++L+SIQ LN+L DD I L
Sbjct: 1290 LQSIQQDLNQLKQENQE--KEKQLSEK--DEKLQSIQQDLNQLNDDQIKKNEKLK--EKE 1343
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVK 266
+QL K ++ D+ +Q Q+ +L+ K
Sbjct: 1344 EQLLKLQQDFNDQQSQQLKQLEEKLSEK 1371
>UniRef50_A0DPB1 Cluster: Chromosome undetermined scaffold_59, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_59,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 341
Score = 34.7 bits (76), Expect = 2.5
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 251 EVNSKNSRRFKKGDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHP 427
+V +K S F+KGD + Y+I E+ ++ A +E KN + K++ +YY+ P
Sbjct: 140 KVKNKQSNTFQKGDRISYVIVENIPGQQLSENAQDPLEAFKN--NYKLNIQYYINQIKIP 197
Query: 428 VI 433
+I
Sbjct: 198 II 199
>UniRef50_A4RU11 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 513
Score = 34.3 bits (75), Expect = 3.3
Identities = 27/92 (29%), Positives = 50/92 (54%)
Frame = +3
Query: 54 FILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQS 233
F+LS++LS+++P+ R ES++ L L DD G+ +L ++ T+N E A + T+
Sbjct: 427 FVLSRVLSDRSPEMR-ESLRRLL--LSDD--GSIRYKRLLVSGERATENGEEEARRATKV 481
Query: 234 HVQVALRLTVKTVGDSKKATLCLTLYVKMEPL 329
++ AL+ + G+S + L +E L
Sbjct: 482 AMEDALKFLLSERGESTRQKLIDDFVAALETL 513
>UniRef50_Q55Y13 Cluster: DNA polymerase; n=2; Filobasidiella
neoformans|Rep: DNA polymerase - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 1973
Score = 34.3 bits (75), Expect = 3.3
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 296 VPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI 442
VPY+I + RA EEL +S L +D +YY+ + L P +SRI
Sbjct: 1764 VPYLI-SNADGRRLIDRARMPEELLSSRSLSIDAEYYIRNLLIPPLSRI 1811
>UniRef50_Q820N6 Cluster: UvrABC system protein C; n=3;
Proteobacteria|Rep: UvrABC system protein C -
Nitrosomonas europaea
Length = 604
Score = 33.9 bits (74), Expect = 4.4
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 15 RRDWSQLAAEAGKFILSQILSEQ-TPDDRLESIQNHLN 125
RR W +AAE + L Q+L +Q + +DRL+++Q LN
Sbjct: 349 RRKWLDMAAENAQLALQQMLIQQASQEDRLQALQEALN 386
>UniRef50_Q8EM11 Cluster: Hypothetical conserved protein; n=1;
Oceanobacillus iheyensis|Rep: Hypothetical conserved
protein - Oceanobacillus iheyensis
Length = 221
Score = 33.5 bits (73), Expect = 5.8
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +3
Query: 108 IQNHLNKLKDDLIGNKMPLSVLAITKQLTKN-PNEYADK---HTQSHVQVALRLTVKTVG 275
+ N+ DD+ + ++ TKQ N N Y +K T H ++AL V +G
Sbjct: 40 VSNNEYPSSDDIDEQESSEFIIRTTKQNLNNLVNAYIEKLLEGTNHHYRIALEEDVHLMG 99
Query: 276 DSKKATLCLTLYVKMEPLTQPRKGL 350
+ + + L V++EPL QP L
Sbjct: 100 ELPVFSSTVPLSVRLEPLVQPNGDL 124
>UniRef50_Q1IJG7 Cluster: Alanyl-tRNA synthetase; n=3; cellular
organisms|Rep: Alanyl-tRNA synthetase - Acidobacteria
bacterium (strain Ellin345)
Length = 1098
Score = 33.5 bits (73), Expect = 5.8
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMD 466
G+I + +G+ +S +R + + H + D H+L V+S I P EG+
Sbjct: 892 GEIGLIKVLHEGSVSSGVRRLEAVTGENSVRHFRKD------HELEGVVSTIVRPSEGLS 945
Query: 467 PARVADC-LGLDPSGTNKLLKEKPTTRKLMRSRTNKKSTDNAKSL 598
PA+ L KL KE +R S +T++A+ +
Sbjct: 946 PAQALKFELDRREEEIKKLRKELEQSRMKSASSAVSSATESAREV 990
>UniRef50_Q7RK77 Cluster: Putative uncharacterized protein PY03026;
n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY03026 - Plasmodium yoelii yoelii
Length = 1481
Score = 33.1 bits (72), Expect = 7.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 78 EQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYA 215
+ TP + +E+++ + N KDD I MP I LT N E A
Sbjct: 595 DTTPTNNIENVEGNNNNFKDDNINGNMPNETQDIKITLTDNTEEEA 640
>UniRef50_A2E9P0 Cluster: DNA polymerase; n=1; Trichomonas vaginalis
G3|Rep: DNA polymerase - Trichomonas vaginalis G3
Length = 932
Score = 33.1 bits (72), Expect = 7.7
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 69 ILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHV 239
I+ ++T DD + ++ + K+ + +I PLS I KQL +N NEY K Q V
Sbjct: 739 IILQKTFDDGVNFVKEMMTKMYNGMI----PLSDFIIQKQLGQNINEYRTKTVQCEV 791
>UniRef50_Q9P6L6 Cluster: DNA polymerase; n=1; Schizosaccharomyces
pombe|Rep: DNA polymerase - Schizosaccharomyces pombe
(Fission yeast)
Length = 1480
Score = 33.1 bits (72), Expect = 7.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 260 SKNSRRFKK-GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVIS 436
+K+ RR + G+ VPY+I + R+ EE +S ++D YY+ + L P +
Sbjct: 1274 TKDPRREPQYGERVPYLIIAAAPGTTLANRSVAPEEFLSSSFSQLDINYYINNSLIPPLD 1333
Query: 437 R 439
R
Sbjct: 1334 R 1334
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,434,582
Number of Sequences: 1657284
Number of extensions: 13230328
Number of successful extensions: 39325
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 37568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39278
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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