Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1006
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    72   8e-14
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    42   1e-04
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    33   0.044
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   2.9  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   2.9  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.9  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   8.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.9  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   8.9  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   8.9  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 72.1 bits (169), Expect = 8e-14
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = +2

Query: 287  GDIVPYIICEDGTANSATQRAYHIEELKNSEH-LKVDFKYYLAHQLHPVISRICEPIEGM 463
            GD++P+II           RAY  +E+ N+   L +D+ YYL+HQ+ P I R+  PIEG 
Sbjct: 1147 GDVIPFIIAGSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIEGT 1206

Query: 464  DPARVADCLGLD 499
            + AR+A+CLGLD
Sbjct: 1207 NRARLAECLGLD 1218



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 32/84 (38%), Positives = 48/84 (57%)
 Frame = +3

Query: 3    LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
            LD+ RR++  LA EA KF L QILS +  +  +E+I ++L    + +   K P +   I 
Sbjct: 1053 LDMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFSEKMRNGKFPANKFIIF 1112

Query: 183  KQLTKNPNEYADKHTQSHVQVALR 254
             +L KNP +Y +  T   VQVAL+
Sbjct: 1113 NRLGKNPEDYPNGKTMPFVQVALK 1136


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 29/93 (31%), Positives = 49/93 (52%)
 Frame = +3

Query: 3    LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
            ++ VRRD   L +    +++   L +   D  +E  Q    K+  DL+ NK+ +S L IT
Sbjct: 814  IETVRRDNCPLVS----YVIDTALRKMLIDQDVEGAQLFTKKVISDLLQNKIDMSQLVIT 869

Query: 183  KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDS 281
            K L+K   +YA K   +HV++A R+  +  G +
Sbjct: 870  KALSK--TDYAAK--MAHVELAERMRKRDAGSA 898



 Score = 33.9 bits (74), Expect = 0.025
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 287  GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEG 460
            GD V Y+I +    +    R+   I  L+N+  + +D KYYL +QL   + RI EPI G
Sbjct: 902  GDRVAYVIIKGAQGDQFYMRSEDPIYVLENN--IPIDAKYYLENQLSKPLLRIFEPILG 958


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 260  SKNSRRFKK-GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVIS 436
            +K+ RR  + G+ VPY+I       +   R+   EE  +S   ++D  YY+ + L P + 
Sbjct: 1274 TKDPRREPQYGERVPYLIIAAAPGTTLANRSVAPEEFLSSSFSQLDINYYINNSLIPPLD 1333

Query: 437  R 439
            R
Sbjct: 1334 R 1334


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 93  DRLESIQNHLNKLKDDLIGNKMPLSVLAITKQL 191
           DR  S   HL  L ++ IG ++P+  L  TKQ+
Sbjct: 568 DRYASSHEHLQFLDENDIGIQLPVHELLFTKQI 600


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 221 TYAISRPSGIEVNSKNSRRFKKGDIV--PYIICED-GTANSATQRAYH 355
           T+  S+  G+E +SK S  F   + +  PY+   +  +AN A+  A+H
Sbjct: 91  TFGYSQLGGLENSSKGSALFNSANSIGTPYLSSRNSNSANEASAMAFH 138


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 12  VRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSV 170
           V  +  +L+ E   +I   + S +T D+R+ESIQ    K    +I  K+P+ +
Sbjct: 15  VSENQKKLSEEWEPYIDKLVASNRTRDERVESIQELFQKC---VIEEKLPVDI 64


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 532 TNDSETYEVENEQEKYRQCKEFV 600
           TN+ E Y V   ++   QCK+F+
Sbjct: 503 TNNDENYLVNQREDLIHQCKKFL 525


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 27  SQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKD 137
           S L  +  K  + ++LS + P DR   + N  N+L D
Sbjct: 175 SSLDEQGRKKQIEEVLSTELPQDRFSQLVNLGNRLTD 211


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 383 DVRNSLILLCGKPFAWLS*RFHLH 312
           D    L+L   +PF+W++ R  +H
Sbjct: 142 DSNGQLVLQLNRPFSWINSRLQIH 165


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 661 SL*IDSRTLFKV-LQFHRRIRRQTLCIVGTFLVRSRPH 551
           SL I   ++ KV    ++R+  Q L   GTFL  SRP+
Sbjct: 58  SLSISKHSIAKVPSNVNKRLELQLLLTSGTFLPNSRPY 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,254
Number of Sequences: 5004
Number of extensions: 58661
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)