Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1006
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199...    84   1e-16
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436...    42   4e-04
06_03_0963 + 26368959-26369462,26370900-26371205                       30   1.7  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    29   4.0  
04_04_0412 + 25023758-25023826,25023927-25023991,25024082-250241...    28   7.1  
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519...    28   9.3  

>01_06_1473 - 37619415-37619561,37619649-37619723,37619800-37619919,
            37620074-37620127,37620204-37620426,37620506-37620585,
            37620675-37620764,37620847-37620960,37621192-37621272,
            37621383-37621490,37621677-37621722,37621802-37621899,
            37621975-37622148,37622456-37622548,37623229-37623285,
            37623399-37623438,37623567-37623685,37624179-37624298,
            37624723-37624815,37624940-37625251,37625325-37625444,
            37625545-37625658,37625731-37625910,37625996-37626110,
            37626195-37626358,37626584-37626769,37626888-37626978,
            37627089-37627153,37627223-37627297,37627410-37627493,
            37627575-37627742,37628160-37629293
          Length = 1579

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 43/87 (49%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
 Frame = +2

Query: 287  GDIVPYIICEDGTANSA-----TQRAYHIEELK-NSEHLKVDFKYYLAHQLHPVISRICE 448
            GD VPYIIC    + S       QRA H EELK N +   +D  YYL+ Q+HPV+SR+C 
Sbjct: 1268 GDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCA 1327

Query: 449  PIEGMDPARVADCLGLDPSGTNKLLKE 529
             I+G  PAR+A+CLGLD S     L E
Sbjct: 1328 SIQGTSPARLAECLGLDSSKFQSRLTE 1354



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 38/84 (45%), Positives = 53/84 (63%)
 Frame = +3

Query: 3    LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
            LD+VRRDWS L+ E G F L+QILS  + DD +ESI + L ++++ + G +  L    IT
Sbjct: 1175 LDMVRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIIT 1234

Query: 183  KQLTKNPNEYADKHTQSHVQVALR 254
            K LTK P +Y D   Q HV + L+
Sbjct: 1235 KSLTKAPEDYPDAKNQPHVALRLK 1258


>11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,
            4369000-4369160,4369233-4369322,4369406-4369480,
            4369569-4369640,4369719-4369891,4369964-4370078,
            4370274-4370387,4370582-4370661,4370755-4370842,
            4370941-4370997,4371111-4371176,4371254-4371349,
            4371459-4371566,4371941-4372039,4372108-4372227,
            4372399-4372437,4372940-4373026,4373276-4373347,
            4373443-4373509,4374455-4374546,4374631-4374708,
            4374785-4374922,4375029-4375164,4375306-4375468,
            4375690-4375849,4375950-4376056,4376149-4376259,
            4377850-4378159
          Length = 1107

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
 Frame = +3

Query: 3    LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
            ++ VRRD   L        L +IL ++     ++ ++N ++    DL+ N++ LS+L IT
Sbjct: 836  IETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTIS----DLLMNRVDLSLLVIT 891

Query: 183  KQLTKNPNEYADKHTQSHVQVALRL------TVKTVGD 278
            K LTK   +YA K   +HV++A R+      T  TVGD
Sbjct: 892  KGLTKTGEDYAVK--AAHVELAERMRKRDAATAPTVGD 927



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 287  GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 454
            GD VPY+I +      A +R+   I  L N+  + +D +YYL +Q+   + RI EPI
Sbjct: 926  GDRVPYVIIKAAKGAKAYERSEDPIYVLDNN--IPIDPQYYLENQISKPLLRIFEPI 980


>06_03_0963 + 26368959-26369462,26370900-26371205
          Length = 269

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
 Frame = +2

Query: 233 SRPSGIEVNSKNSRRFKKGDIVPYIICE-DGTANSATQRAYHIEELKNSEHL---KVDFK 400
           +R +G  V+ +  R ++ GD   ++    + +AN A  R+  +++ K  E L   +    
Sbjct: 99  NRGAGWVVSGRGYREYRLGDYSTWLQRRVENSANWAKIRSC-LQDGKVCEKLGARRETMD 157

Query: 401 YYLAHQLHPVISRICEPIEGMDPARVADCLGLDPSGTN 514
            ++   L P+ S  C+P  G + A V++ +   PSG N
Sbjct: 158 QFVGSNLSPIQSGCCKPPTGCNFAYVSETVWTKPSGFN 195


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 338 TQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMDPARVAD 484
           T +  H+ ++K   H+ ++F      QL+ ++S I   +EG  PA +AD
Sbjct: 216 TDKETHMFDVKAWVHVSMEF------QLNKIVSGIISHVEGSTPANIAD 258


>04_04_0412 +
           25023758-25023826,25023927-25023991,25024082-25024145,
           25024806-25024940,25025029-25025160,25025470-25025553,
           25025638-25025736,25025992-25026083,25026280-25026352,
           25026476-25026628,25026721-25026840,25026926-25026979,
           25027188-25027271,25027431-25027505,25027585-25027728,
           25028016-25028123,25028340-25028459,25028909-25029102,
           25029193-25029319
          Length = 663

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +3

Query: 96  RLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHVQVALRLTVKTVG 275
           +L S++ +L   + D + + M ++     ++LTK P E + +  QS V +ALR T     
Sbjct: 368 KLRSLKRYLLLDQGDFLVHFMDIA----REELTKKPEEISVEKLQSLVDIALRSTAAASD 423

Query: 276 DSKKATLC 299
            S +   C
Sbjct: 424 PSHEDLTC 431


>10_08_0799 -
           20650799-20650947,20651022-20651114,20651906-20651934,
           20652039-20652097,20652170-20652283,20652374-20652534,
           20652544-20652663,20652741-20653469,20654980-20655244
          Length = 572

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 497 DPSGTNKLLKEKPTTRKLMRSRT 565
           DP   N+LL   P TR LM S T
Sbjct: 419 DPQSMNQLLNFNPNTRNLMESNT 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,496
Number of Sequences: 37544
Number of extensions: 353503
Number of successful extensions: 961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)