Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1006
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34263| Best HMM Match : MORN (HMM E-Value=0.067) 64 9e-11
SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0) 52 7e-07
SB_9856| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_37554| Best HMM Match : GED (HMM E-Value=0.52) 29 4.1
SB_47034| Best HMM Match : GED (HMM E-Value=0.52) 29 5.5
SB_36805| Best HMM Match : GED (HMM E-Value=0.24) 29 5.5
SB_20011| Best HMM Match : GED (HMM E-Value=0.65) 29 5.5
SB_8380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_33441| Best HMM Match : PDE6_gamma (HMM E-Value=6) 29 5.5
SB_24060| Best HMM Match : GED (HMM E-Value=0.52) 29 5.5
SB_19038| Best HMM Match : GED (HMM E-Value=0.52) 29 5.5
SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4) 29 5.5
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98) 28 7.2
SB_40628| Best HMM Match : PCNA_N (HMM E-Value=8.4) 28 9.5
SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)
Length = 757
Score = 64.5 bits (150), Expect = 9e-11
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 27/126 (21%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHL-------------------- 122
LDIVRRDW LA +AG ++LSQILS Q+ + ++++ + L
Sbjct: 10 LDIVRRDWCDLAKDAGNYVLSQILSAQSREAIVDNVHDFLITSEFVWILDQLCYPSSYDD 69
Query: 123 ---NKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHVQVALRLTVKT----VGDS 281
+ + +D+ G K+ L I KQLTK P++Y DK + HV VAL L K+ VGD+
Sbjct: 70 LFWSTVGEDVKGGKVDLQKYVINKQLTKAPHDYPDKKSLPHVHVALWLMSKSRKVGVGDT 129
Query: 282 KKATLC 299
+C
Sbjct: 130 IPYVIC 135
>SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)
Length = 852
Score = 51.6 bits (118), Expect = 7e-07
Identities = 32/95 (33%), Positives = 52/95 (54%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
++ VRRD L A L ++L E+ P +E + ++ DL+ N++ +S L IT
Sbjct: 696 IETVRRDNCPLVANLINACLKKLLIERNPQGAVE----YTKQVISDLLCNRIDISQLVIT 751
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDSKK 287
K+LTK EYA K Q+H ++A R+ + G + K
Sbjct: 752 KELTKTGEEYAGK--QAHSELAERMRKRDAGSAPK 784
Score = 37.1 bits (82), Expect = 0.016
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 281 KKGDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIE 457
K GD VPY+I A ++A I L+N+ + +D YYL +QL + RI EPI
Sbjct: 784 KLGDRVPYVIIAGAKGAKAYEKAEDPIYVLENN--VPIDTGYYLENQLSKPLLRIFEPIL 841
Query: 458 GMDPARVA 481
G A A
Sbjct: 842 GESKASSA 849
>SB_9856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 296 VPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMD 466
VPY++ Q EE+ E L+V+ YY+ Q+ P + R+ I G+D
Sbjct: 53 VPYVVVYGSPGLPLIQLVKRPEEVLQDERLRVNASYYITKQILPPLHRVFSLI-GVD 108
>SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 535 NDSETYEVENEQEKYRQCKEFVFECVDETVKL*TEYENRSINWTKRH 675
ND E + ++K RQ +E + +C+ E+VKL E + K H
Sbjct: 40 NDRELERLRESEQKIRQVQEEIPKCITESVKLKDLLEELKVAREKCH 86
>SB_37554| Best HMM Match : GED (HMM E-Value=0.52)
Length = 187
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 128 CYDGAGNMAG-RLNGASSLIRAEHEKAIFAHCMNHQLNLCIANTCQ 172
>SB_47034| Best HMM Match : GED (HMM E-Value=0.52)
Length = 238
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 191 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 235
>SB_36805| Best HMM Match : GED (HMM E-Value=0.24)
Length = 377
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 318 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 362
>SB_20011| Best HMM Match : GED (HMM E-Value=0.65)
Length = 427
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 331 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 375
>SB_8380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 77 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 121
>SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 218 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 262
>SB_33441| Best HMM Match : PDE6_gamma (HMM E-Value=6)
Length = 328
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 512 NKLLKEKPTTRKLMRSRTNKKSTDNAKSLSSNA 610
NK KPT ++R + +KST+++K LSS +
Sbjct: 35 NKSQLSKPTKENVVRYSSEEKSTNDSKRLSSKS 67
>SB_24060| Best HMM Match : GED (HMM E-Value=0.52)
Length = 297
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 238 CYDGAGNMAG-RLNGASSLIRAEHEKTIFVHCMNHQLNLCIANTCQ 282
>SB_19038| Best HMM Match : GED (HMM E-Value=0.52)
Length = 250
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 191 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 235
>SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4)
Length = 285
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 169 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 213
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -2
Query: 710 YTFHSDSDLKTKCLFVQFIDRFSYSVQSFTVSSTHSKTN 594
Y F SDL CL F+ ++ F SS H+ N
Sbjct: 146 YVFRISSDLILPCLIQVFVKEMAFRCSKFFASSFHTFEN 184
>SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 448
C DG N A R L +EH K F + + HQL+ I+ C+
Sbjct: 175 CYDGAGNMAG-RFNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 219
>SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)
Length = 731
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 329 NSATQRAYHIEELKNSEHLKVDFKYYLAH 415
NSAT A H + L ++ L VDFK LA+
Sbjct: 76 NSATHAALHNKRLTSNNVLNVDFKSTLAY 104
>SB_40628| Best HMM Match : PCNA_N (HMM E-Value=8.4)
Length = 188
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 311 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRIC 445
C DG N A R L +EH K F + + HQL+ I+ C
Sbjct: 68 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTC 111
>SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 99 LESIQNHLNKLKDDLI--GNKMPLSVLAITKQLTKNPNEYADKHTQSHVQVALRLTVKTV 272
+ ++ +LK L+ GN S+ + + +TK P+ DKH V LR +K
Sbjct: 154 VNEVETSFEELKSGLMSSGNSDMSSLEELKECVTKKPSTVTDKHVTYIVNKFLRSVIKDF 213
Query: 273 GD-SKKATLCLTLYVKM 320
+ K T T VKM
Sbjct: 214 SSATAKETDTHTSAVKM 230
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,937,713
Number of Sequences: 59808
Number of extensions: 422414
Number of successful extensions: 1174
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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