Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1006
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical... 100 2e-21
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr... 48 6e-06
AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna bi... 33 0.29
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 32 0.51
U50309-6|AAG24134.1| 247|Caenorhabditis elegans Hypothetical pr... 29 4.8
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ... 29 4.8
U41037-1|AAA82387.1| 629|Caenorhabditis elegans Gtpase activati... 28 6.3
AF118123-1|AAD13781.1| 629|Caenorhabditis elegans GTPase activa... 28 6.3
Z68000-2|CAA91970.2| 224|Caenorhabditis elegans Hypothetical pr... 28 8.3
AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical ... 28 8.3
>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
protein Y47D3A.29 protein.
Length = 1428
Score = 99.5 bits (237), Expect = 2e-21
Identities = 45/97 (46%), Positives = 60/97 (61%)
Frame = +2
Query: 254 VNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVI 433
+N + DIV Y+ICEDGT N ATQRAYH E+ + LK+D YYLA Q+HPV+
Sbjct: 1126 LNKSGKFNLRHNDIVEYVICEDGTDNPATQRAYHRTEMAENSALKIDLLYYLAQQIHPVV 1185
Query: 434 SRICEPIEGMDPARVADCLGLDPSGTNKLLKEKPTTR 544
SR+ EPIE D R+A+ LGLD + + + + R
Sbjct: 1186 SRLVEPIEETDAVRIAENLGLDSTNYRRAAAAQASQR 1222
Score = 79.0 bits (186), Expect = 3e-15
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQ-TPDDRLESIQNHLNKLKDDLIGNKMPLSVLAI 179
LDIVRRDWSQLA E G ++ +IL T D+ + SI + L +++ L +PL + I
Sbjct: 1041 LDIVRRDWSQLAKETGTAVVDKILDASLTRDEMVSSIDDLLREIRAKLDSGTVPLEMFQI 1100
Query: 180 TKQLTKNPNEYADKHTQSHVQVALRL 257
+KQLT+NP +YAD Q H VA RL
Sbjct: 1101 SKQLTRNPEQYADVKAQCHAAVAQRL 1126
>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical protein
F10C2.4 protein.
Length = 1081
Score = 48.4 bits (110), Expect = 6e-06
Identities = 30/95 (31%), Positives = 55/95 (57%)
Frame = +3
Query: 3 LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
L+ VRRD L A+ L ++L E+ L+ + ++ DL+ NK+ +S+L I+
Sbjct: 799 LETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTIS----DLLCNKIDISLLIIS 854
Query: 183 KQLTKNPNEYADKHTQSHVQVALRLTVKTVGDSKK 287
K+LTK+ ++Y K Q+HV++A R+ + G + +
Sbjct: 855 KELTKSGDKYQAK--QAHVELAARMKKRDAGSAPR 887
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +2
Query: 287 GDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEG 460
GD VPY+ A +RA + + ++ +D K+YL +QL ++RI EPI G
Sbjct: 889 GDRVPYVFVAAAKNVPAYERAEDPTFVLQN-NIPLDTKHYLTNQLAKPLARIFEPILG 945
>AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna
binding factor protein 1 protein.
Length = 614
Score = 32.7 bits (71), Expect = 0.29
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 308 ICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI-CEPIEGMDPARVAD 484
IC D AN Q+ + LKN E + VDF H + C ++ + AD
Sbjct: 316 ICVDQNANHVIQKVVAVIPLKNWEFI-VDFVATPEHLRQICFDKYGCRVVQTIIEKLTAD 374
Query: 485 CLGLDPSGTNKLLKEKPTTRKLMRSRTNK 571
+ +D + + L+E+ ++LM S TN+
Sbjct: 375 SINVDLTSAAQHLRER-ALQRLMTSVTNR 402
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 31.9 bits (69), Expect = 0.51
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 308 ICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRI--CEPIEGMDPARVA 481
IC D AN Q+ + LKN E + VDF H L + S C ++ + A
Sbjct: 318 ICVDQNANHVIQKVVAVIPLKNWEFI-VDFVATPEH-LRQICSDKYGCRVVQTIIEKLTA 375
Query: 482 DCLGLDPSGTNKLLKEKPTTRKLMRSRTNK 571
D + +D + + L+E+ ++LM S TN+
Sbjct: 376 DSMNVDLTSAAQNLRER-ALQRLMTSVTNR 404
>U50309-6|AAG24134.1| 247|Caenorhabditis elegans Hypothetical
protein F58G4.3 protein.
Length = 247
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 99 LESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNE 209
L+ + +LNKL+DDL+GN L V +T + K P E
Sbjct: 78 LKVLDLNLNKLQDDLLGNSSAL-VGLLTNFIGKIPEE 113
>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
protein Y37B11A.2 protein.
Length = 1133
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/57 (22%), Positives = 28/57 (49%)
Frame = +2
Query: 284 KGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 454
+G+ VPY+I + T ++ I++ + K++ YYL + + R+ + I
Sbjct: 971 RGERVPYVIIDGVTGSTVYSCVRSIDQFARNPEYKINTFYYLNAHILAALRRVTDLI 1027
>U41037-1|AAA82387.1| 629|Caenorhabditis elegans Gtpase activating
protein familyprotein 1 protein.
Length = 629
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 398 KYYLAHQLHPVISRICEPIEG--MDPARVADCLGLDPSGTNKLLKEKPTTRKLMRSRTN 568
K YL L PV+ +I + + +DPARVA L+ + N L+ + ++ S TN
Sbjct: 226 KMYLITTLKPVVDKIYKERKNCEVDPARVAVGASLEKNRNNLLVYFQMLFERVTTSSTN 284
>AF118123-1|AAD13781.1| 629|Caenorhabditis elegans GTPase
activating protein GAP-1 protein.
Length = 629
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 398 KYYLAHQLHPVISRICEPIEG--MDPARVADCLGLDPSGTNKLLKEKPTTRKLMRSRTN 568
K YL L PV+ +I + + +DPARVA L+ + N L+ + ++ S TN
Sbjct: 226 KMYLITTLKPVVDKIYKERKNCEVDPARVAVGASLEKNRNNLLVYFQMLFERVTTSSTN 284
>Z68000-2|CAA91970.2| 224|Caenorhabditis elegans Hypothetical
protein C05C9.2 protein.
Length = 224
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 251 EVNSKNSRRFKKGDIVPYIICEDGTANSATQRAYHIEELKNSEHLKVD 394
E+ + R+ GD PYI+ +D T + + YH EH + D
Sbjct: 129 ELLDSDEERYSIGD-APYIMDDDDTLDDILRDTYHESASNPIEHYQTD 175
>AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical
protein F54A3.4 protein.
Length = 755
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 162 LSVLAITKQLTKNPNEYADKHTQSHVQVALRL 257
LSVL T + + PNE A SH+ VALRL
Sbjct: 445 LSVLGST--IVRTPNEAAFNSPSSHIGVALRL 474
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,333,316
Number of Sequences: 27780
Number of extensions: 329885
Number of successful extensions: 975
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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