Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1006
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    85   6e-17
At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catal...    37   0.017
At1g33170.1 68414.m04096 dehydration-responsive family protein s...    30   1.9  
At5g14020.1 68418.m01639 expressed protein                             28   7.8  

>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catalytic
            subunit, putative similar to SP|O48653 DNA polymerase
            alpha catalytic subunit (EC 2.7.7.7) {Oryza sativa};
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1492

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 14/129 (10%)
 Frame = +2

Query: 278  FKKGDIVPYIIC-EDGTANSAT-----QRAYHIEELKNS-EHLKVDFKYYLAHQLHPVIS 436
            F   D VPYIIC E G A+SA+     +RA H +E+K+      VD  YYLA Q+HPV+S
Sbjct: 1213 FNAKDTVPYIICYEQGNASSASSAGIAERARHPDEVKSEGSRWLVDIDYYLAQQIHPVVS 1272

Query: 437  RICEPIEGMDPARVADCLGLDP----SGTNKLLKEKPTTRKLMRS---RTNKKSTDNAKS 595
            R+C  I+G  P R+A+CLGLDP    S +N      P+T  L  +    + K +T   + 
Sbjct: 1273 RLCAEIQGTSPERLAECLGLDPSKYRSKSNDATSSDPSTSLLFATSDEESKKPATPETEE 1332

Query: 596  LSSNASMKL 622
              S   +KL
Sbjct: 1333 SDSTFWLKL 1341



 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 39/85 (45%), Positives = 55/85 (64%)
 Frame = +3

Query: 3    LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
            +D+VRRDWS L+ E G   LS+IL   + +D +E+I N L K+K+++   ++ L    IT
Sbjct: 1120 VDMVRRDWSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVIT 1179

Query: 183  KQLTKNPNEYADKHTQSHVQVALRL 257
            K LTK P  Y D  +Q HVQVALR+
Sbjct: 1180 KTLTKPPAAYPDSKSQPHVQVALRM 1204


>At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catalytic
            subunit, putative (POLD1) similar to DNA polymerase delta
            [Glycine max] GI:2895198, OsPol delta large subunit
            [Oryza sativa (japonica cultivar-group) GI:9188570;
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1081

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = +3

Query: 3    LDIVRRDWSQLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAIT 182
            ++ VRRD   L        L++IL ++      E+++  ++    DL+ N++ LS+L IT
Sbjct: 824  IETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENVKKTIS----DLLMNRIDLSLLVIT 879

Query: 183  KQLTKNPNEYADKHTQSHVQVALR----LTVKTVGD 278
            K LTK  ++Y  K     +   +R     T   VGD
Sbjct: 880  KGLTKTGDDYEVKSAHGELAERMRKRDAATAPNVGD 915



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 287  GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 454
            GD VPY+I +      A +R+   I  L+N+  + +D  YYL +Q+   + RI EP+
Sbjct: 914  GDRVPYVIIKAAKGAKAYERSEDPIYVLQNN--IPIDPNYYLENQISKPLLRIFEPV 968


>At1g33170.1 68414.m04096 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 639

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 536 TTR-KLMRSRTNKKSTDNAKSLSSNASMKL*NFEQSTRIDL*TGQRDISFLDRCQNEKCN 712
           TTR +  +++TN  S D + SLSS+  ++L +FE   +++L    + + + + C      
Sbjct: 61  TTRAQTTQTQTNPSSDDTSSSLSSSEPVEL-DFESHHKLELKITNQTVKYFEPCDMSLSE 119

Query: 713 VKPLD 727
             P +
Sbjct: 120 YTPCE 124


>At5g14020.1 68418.m01639 expressed protein 
          Length = 406

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/84 (22%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +3

Query: 72  LSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHVQVAL 251
           +S +T  +RL  ++N +  + +D  G+ +     A+ + L+        K ++  ++  +
Sbjct: 45  VSPKTTINRLTCLRNQIELVAEDTGGSAISELRTALEEYLSLLSGLI--KKSKDGMEGCV 102

Query: 252 RLTVKTVGDSKKATLCLT-LYVKM 320
            L  +T+GD ++A +C T L+++M
Sbjct: 103 ELKWRTLGDGRRAEICCTNLWMEM 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,274,951
Number of Sequences: 28952
Number of extensions: 298779
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)