Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1005
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    28   1.1  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    27   2.0  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   8.1  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   8.1  

>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 105 KFYDLSPTAAWSACVVLIPVMIVFLAFAIHFYMSLATHKYEVTVTGIKELNCSKNRSKW 281
           KFYD   T+   AC  L  +M+  +AF   FY  LA  K  + +  +  L    +  +W
Sbjct: 40  KFYDYGNTSWILACTPLCLIMVPGVAF---FYSGLARRKNTLALIMLSMLGLCVSFFQW 95


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 219 KYEVTVTGIKELNCSKNRSKWATTTPE 299
           KY V+  GI E+N S  R  W T  P+
Sbjct: 200 KYAVSYGGIFEINTSAFRKGWKTAYPQ 226


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 195 FYMSLATHKYEVTVTGIKELNCSKNRSKWATTTPE*TA 308
           FYM L  H   V +  +K  +CSK  S  +  T + +A
Sbjct: 166 FYMHLLKHMVAVCIAELKPGSCSKVSSPVSAITADESA 203


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 33  VAWAFSTLLGLILFLIEIAILC-WVK 107
           + W FS L  L++F I   ILC W K
Sbjct: 590 LGWFFSILGSLMIFAISSFILCKWYK 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,596
Number of Sequences: 5004
Number of extensions: 49024
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)