Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1005
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371...    29   2.7  
08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469...    27   8.2  

>03_01_0490 +
           3711009-3711383,3712104-3712202,3713209-3713461,
           3713908-3714090,3714091-3714227,3714511-3714710,
           3714797-3714994,3715109-3715271
          Length = 535

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +3

Query: 45  FSTLLGLILFLIEIAILCWVKFYDLSPTAAWSACVVLIPVMIVFLAFAIHFYMSLATHKY 224
           +  ++ L + + E++I  W   Y   PTA      +  P  I  + F I F   +A H+ 
Sbjct: 379 YCVVIPLSVMVPEVSIPVWGMVY--IPTAITIMNAIRNPGSIHLMPFWILFENVMAMHRM 436

Query: 225 EVTVTGIKELNCSKNRSKWATT 290
              +TG+ E   + N ++W  T
Sbjct: 437 RAALTGLLE---TMNVNQWVVT 455


>08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,
            4695422-4696072,4696179-4696395,4697040-4697111,
            4697167-4697257,4697367-4698363,4698914-4699044,
            4699584-4699802,4700110-4700805,4700912-4701121,
            4701606-4701710
          Length = 1271

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 80   RDSYTMLG*ILRFE-SDGSLVGLCGPYTCYDCIF 178
            + S+ + G +LR +  + ++V +CG   CY CI+
Sbjct: 987  QSSFAIFGLLLRQDVPEDAVVTMCGHVFCYQCIY 1020


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,271
Number of Sequences: 37544
Number of extensions: 292303
Number of successful extensions: 633
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)