Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1005
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 9e-24
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35) 29 2.8
SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 28 4.8
SB_37549| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 28 4.8
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_19828| Best HMM Match : Death (HMM E-Value=0.00028) 28 6.4
SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11) 28 6.4
SB_1365| Best HMM Match : Keratin_B2 (HMM E-Value=0.35) 28 6.4
SB_56137| Best HMM Match : Phospholip_A2_1 (HMM E-Value=4.4e-05) 27 8.5
SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1) 27 8.5
SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44) 27 8.5
>SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 107 bits (256), Expect = 9e-24
Identities = 48/84 (57%), Positives = 62/84 (73%)
Frame = +3
Query: 3 PHERLHWYIEVAWAFSTLLGLILFLIEIAILCWVKFYDLSPTAAWSACVVLIPVMIVFLA 182
PHE++H Y+E+AW FST LG +LFL EI IL WVKFY S AA ++ VL+PV ++F+
Sbjct: 110 PHEKMHLYVELAWIFSTGLGTLLFLGEIGILSWVKFYKYSIAAAIASSAVLLPVCVLFVV 169
Query: 183 FAIHFYMSLATHKYEVTVTGIKEL 254
FA+HFY SLA H+YE GI+EL
Sbjct: 170 FAVHFYRSLAQHRYERFYQGIEEL 193
>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2988
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Frame = +3
Query: 3 PHERLHWYIEVAW--AFSTLLGLILFLIEIAILCWVKF----YDLSPTAAWSACVVL--- 155
P++ ++ AW +F ++LG+++F+ I + ++F + L+ T + SA +
Sbjct: 2661 PNDYTNFQYISAWQMSFESILGILVFISTIKFIKLLRFNKKMFLLAYTLSRSAKDLAHYG 2720
Query: 156 IPVMIVFLAFAIHFYMSLATHKYEVTVTGIKEL 254
I +IVFL+FA +Y+ L + Y+ T +K +
Sbjct: 2721 IMFLIVFLSFAQFYYLLLGS-DYDSFSTFVKSI 2752
>SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
Length = 674
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 239 CHRDFVLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
C VL RR G C RQ Y++ RY +GR RR
Sbjct: 242 CCYPIVLPRRYGAYTSCCGRQTYDNRRYICCSGRVVLRR 280
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 224 VLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
+L RR G + C RQ Y++ RY +GR RR
Sbjct: 305 ILPRRYGVYTLCCGRQTYDNRRYICCSGRVVLRR 338
>SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 36 AWAFSTLLGLILFLIEIAILCWVKFYDLSPTAAWSA-CVVLIPVMIVF 176
+WA L + ++ +A++C+ K S T ++ CV LIPVM +F
Sbjct: 472 SWAVLCLCASCIVIV-VAMVCFYKLPRNSATFPFTVPCVPLIPVMTIF 518
>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +3
Query: 48 STLLGLILFLIEIAILCWVKFYDLSPTAAWSACVVLIPVMIVFL 179
STL +I+ I I + + + L T+++S C+ +I V+I+F+
Sbjct: 498 STLSCIIIITITIISIIIMHHHHLPETSSFSPCINIIVVVILFV 541
>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1357
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 224 VLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
+L RR G + C RQ Y++ RY +GR RR
Sbjct: 603 ILPRRYGVYTLCCGRQTYDNRRYICCSGRVVLRR 636
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 239 CHRDFVLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
C VL RR G C RQ Y++ RY +GR RR
Sbjct: 540 CCYPTVLPRRYGVYTSCCGRQTYDNRRYICCSGRVVLRR 578
>SB_37549| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 309
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 224 VLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
+L RR G + C RQ Y++ RY +GR RR
Sbjct: 230 ILPRRYGVYTLCCGRQTYDNRRYICCSGRVVLRR 263
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 280 HFDLFFEQFNSLIPVTVTSYLCVARDM*KCIANAKNTII 164
+F LF + F SLI V + SY R+ C++ +K I
Sbjct: 3 YFVLFVQNFVSLIFVVLFSYALENRESRSCVSGSKKEFI 41
>SB_19828| Best HMM Match : Death (HMM E-Value=0.00028)
Length = 106
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 445 ECAITRAFIVSVVSTFISATDHVYLCYLCTGLKT 546
EC ++AF++ +++ + +TDH + GL T
Sbjct: 10 ECITSKAFLLDTIASLLDSTDHAGPVFNWRGLAT 43
>SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11)
Length = 759
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 239 CHRDFVLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
C VL RR G C RQ Y++ RY +GR RR
Sbjct: 467 CCYPTVLPRRYGVYTSCCGRQTYDNRRYICCSGRVVLRR 505
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 224 VLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
+L RR G C RQ Y++ RY +GR RR
Sbjct: 530 ILPRRYGVYTFCCGRQTYDNRRYICCSGRVVLRR 563
>SB_1365| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
Length = 348
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 239 CHRDFVLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
C VL RR G C RQ Y++ RY +GR RR
Sbjct: 134 CCYPTVLPRRYGVYTSCCGRQTYDNRRYICCSGRVVLRR 172
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 224 VLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
+L RR G C RQ Y++ RY +GR RR
Sbjct: 197 ILPRRYGVYTFCCGRQTYDNRRYICCSGRVVLRR 230
>SB_56137| Best HMM Match : Phospholip_A2_1 (HMM E-Value=4.4e-05)
Length = 118
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 188 CERQKYNHNRYKDHTGRPSCRRTQ 117
C ++ Y +NRYKD+ CR+ +
Sbjct: 92 CFKRSYYNNRYKDYNKNKYCRKNR 115
>SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)
Length = 977
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 262 EQFNSLIPVTVTSYLCVARDM*KCIANAKNTIITGIRTTQADQAA 128
EQ+NS+ TV SYLC A + N+I +RT Q A
Sbjct: 929 EQYNSIYAQTVQSYLC-ANSTTPVVCEQSNSIY--VRTVQLHSCA 970
>SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44)
Length = 319
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 224 VLVRRQGHVKMYCERQKYNHNRYKDHTGRPSCRR 123
VL RR G C RQ Y++ RY +GR RR
Sbjct: 240 VLPRRYGVYTSCCGRQTYDNRRYICCSGRVVLRR 273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,678
Number of Sequences: 59808
Number of extensions: 369612
Number of successful extensions: 962
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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