Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1005
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical pr...    69   3e-12
AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81047-8|CAB02830.2|  323|Caenorhabditis elegans Hypothetical pr...    24   3.0  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    28   5.6  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    28   5.6  
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    27   9.7  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    27   9.7  

>U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical
           protein C09F5.2 protein.
          Length = 293

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = +3

Query: 3   PHERLHWYIEVAWAFSTLLGLILFLIEIAILCWVKFYDLS-PTAAWSACVVLIPVMIVFL 179
           PH +L +YI+++W FST +GL+LFL+EI ++ +VKF  +  PTA +    +L+PV +VF+
Sbjct: 186 PHIKLKFYIDLSWLFSTCIGLLLFLVEIGVIFYVKFTAVGYPTAGYITTAMLVPVGVVFV 245

Query: 180 AFAIHFYMSLATH 218
            F+   + +  +H
Sbjct: 246 VFSYLIHKNRVSH 258


>AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.15 protein.
          Length = 273

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 447 MRDNTCLHCIRCFYVYFSYGSRVSLLSLYRSQNL 548
           +++  C+H  +  + YFS+   VSLL  + +Q L
Sbjct: 167 LKEKECIHIKKVVFEYFSFNDIVSLLPYFNAQVL 200


>Z81047-8|CAB02830.2|  323|Caenorhabditis elegans Hypothetical
           protein C41G6.10 protein.
          Length = 323

 Score = 24.2 bits (50), Expect(2) = 3.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 165 MIVFLAFAIHFYMSLATHKYE 227
           MIVFL +++ F +S+++  YE
Sbjct: 141 MIVFLIWSLTFTLSMSSESYE 161



 Score = 23.0 bits (47), Expect(2) = 3.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 39  WAFSTLLGLILFLI 80
           W +  LLG+I+FLI
Sbjct: 133 WIYHVLLGMIVFLI 146


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 443 SNAR*HVPSLYPLFLRLFQLRITCIFVIFV---PVSKLNIVIISLKYL 577
           S+ + H P  Y ++  L  L   CI+ I +   P+ +LN VI+  +YL
Sbjct: 201 SSFKLHRPQNYIMYQLLLALFAKCIYAIHIFQSPLHELNEVILKYQYL 248


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 164 YDCIFGVRNTFLHVPGDAQVRSHGDRYQRIKLLKEQIEMGDHDARMNSL 310
           +D    +RN FL+ P    V S G R+Q +   +   E+GD  +R +S+
Sbjct: 329 HDVRLMLRNCFLYNPVGDPVHSFGLRFQEV-FDRRWAELGDSSSRASSV 376


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 164 YDCIFGVRNTFLHVPGDAQVRSHGDRYQRIKLLKEQIEMGDHDARMNSL 310
           +D    +RN FL+ P    V S G R+Q +   +   E+GD  +R +S+
Sbjct: 329 HDVRLMLRNCFLYNPVGDPVHSFGLRFQEV-FDRRWAELGDSSSRASSV 376


>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical protein
            K02B12.5 protein.
          Length = 1204

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 236  DRYQRIKLLKEQIEMGDHDARMNSLTLLDQSRVV 337
            D   R+KLL  + E+   D  +NSL LLD +R +
Sbjct: 952  DVTNRLKLLSTESELDLSDLYLNSLELLDVTRTL 985


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 69  LFLIEIAILCWVKFYDLSPTAAWSACVVLIPVMIV 173
           L+ I IAIL WV F+D     A++  V LIP+  V
Sbjct: 94  LYFIFIAILNWVPFFD-----AYTRYVGLIPICFV 123


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 69  LFLIEIAILCWVKFYDLSPTAAWSACVVLIPVMIV 173
           L+ I IAIL WV F+D     A++  V LIP+  V
Sbjct: 94  LYFIFIAILNWVPFFD-----AYTRYVGLIPICFV 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,225,728
Number of Sequences: 27780
Number of extensions: 275723
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)