Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1005
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.72 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.72 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   0.95 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 248 RIKLLKEQIEMGDHDARMNSLTLLDQSRV 334
           R + L E++   D   R+  LTL D SRV
Sbjct: 87  REQWLDERLRFNDFGGRLKYLTLTDASRV 115


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 248 RIKLLKEQIEMGDHDARMNSLTLLDQSRV 334
           R + L E++   D   R+  LTL D SRV
Sbjct: 87  REQWLDERLRFNDFGGRLKYLTLTDASRV 115


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 138 SACVVLIPVMIVFLAFAIHF 197
           + C V IP+M++FLAF + F
Sbjct: 226 TVCFV-IPIMLLFLAFFVSF 244


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 323 GPATLSCSFWRRGRP 279
           GP T  C+FW    P
Sbjct: 568 GPRTTYCAFWNEFLP 582


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,368
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)