Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1005
(583 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein co... 35 0.045
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 31 0.42
At4g01740.1 68417.m00226 DC1 domain-containing protein similar t... 31 0.74
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ... 31 0.74
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 30 1.3
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ... 29 2.3
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 29 3.0
At4g01920.1 68417.m00255 DC1 domain-containing protein similar t... 28 4.0
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 28 5.2
At1g11915.1 68414.m01375 expressed protein 28 5.2
At5g48657.1 68418.m06020 defense protein-related weak similarity... 27 6.9
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ... 27 6.9
At1g68350.1 68414.m07807 hypothetical protein 27 6.9
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil... 27 9.1
At1g31830.2 68414.m03909 amino acid permease family protein weak... 27 9.1
At1g31830.1 68414.m03910 amino acid permease family protein weak... 27 9.1
At1g28760.1 68414.m03537 expressed protein ; expression supporte... 27 9.1
>At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein
contains Pfam profile PF01011: PQQ enzyme repeat
Length = 978
Score = 34.7 bits (76), Expect = 0.045
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 159 PVMIVFLA-FAIHFYMSLATHKYEVTVTGIKELNCSKNRSKW 281
PV VF + ++ Y +L HKYEVTV I + + ++N++ W
Sbjct: 754 PVHAVFSENWVVYHYFNLRAHKYEVTVVEIYDQSRAENKNVW 795
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 62 LNLILDRDSYTMLG*ILRFESDG-SLVGLCGPYTCYDCIFGVRNTFLHVPGDAQVRSHGD 238
LNL T+L +L F + L G PYTC C F + L +P + H
Sbjct: 269 LNLKAHDHQLTLLPRLLSFTCNACGLNGDRSPYTCVQCDFMIHQDCLDLPRVININQHDH 328
Query: 239 RYQR 250
R R
Sbjct: 329 RVSR 332
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 134 LVGLCGPYTCYDCIFGVRNTFLHVPGDAQVRSHGDRYQRIKLL 262
L G PY C C F + L +P V H R R +L
Sbjct: 598 LSGDRSPYICIQCDFMIHQDCLDLPRLINVNRHDHRVSRTSVL 640
>At4g01740.1 68417.m00226 DC1 domain-containing protein similar to
T15B16.6 similar to A. thaliana CHP-rich hypothetical
proteins encoded by T10M13, GenBank accession number
AF001308
Length = 652
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 152 PYTCYDCIFGVRNTFLHVPGDAQVRSHGDRYQRIKLL 262
PY C C F + LH+P + H R R +L
Sbjct: 241 PYICVQCDFMIHQVCLHLPRVININRHDHRVSRTSVL 277
>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 574
Score = 30.7 bits (66), Expect = 0.74
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 134 LVGLCGPYTCYDCIFGVRNTFLHVPGDAQVRSHGDRYQR 250
++G C PY C++C F + + +P + H R R
Sbjct: 152 MLGDCNPYFCFECGFMLHKDCIDLPRVININRHDHRISR 190
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 21 WYIEVAWAFSTLLGLILFLIEIAILCWVKF 110
W + +AW + ++G +LF I IA + W F
Sbjct: 1797 WVMTLAWVYDLVMGSLLF-IPIAFMAWFPF 1825
>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 62 LNLILDRDSYTMLG*ILRFESDG-SLVGLCGPYTCYDCIFGVRNTFLHVPGDAQVRSHGD 238
LNL T+L + F + L G PY C+ C F + L +P + H
Sbjct: 236 LNLKAHDHQLTLLPRLDSFTCNACGLKGDRSPYVCFQCGFMIHQDCLDLPRVININRHDH 295
Query: 239 RYQRIKLL 262
R R +L
Sbjct: 296 RVSRTSVL 303
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 62 LNLILDRDSYTMLG*ILRFESDG-SLVGLCGPYTCYDCIFGVRNTFLHVPGDAQVRSHGD 238
LNL T+L + F + L G PY C+ C F + L +P + H
Sbjct: 237 LNLKAHDHQLTLLPRLDSFTCNACGLKGDRSPYVCFQCGFMIHQDCLSLPRLININRHDH 296
Query: 239 RYQRIKLL 262
R R +L
Sbjct: 297 RVSRTSVL 304
>At4g01920.1 68417.m00255 DC1 domain-containing protein similar to
A. thaliana CHP-rich proteins
Length = 658
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 62 LNLILDRDSYTMLG*ILRFESDG-SLVGLCGPYTCYDCIFGVRNTFLHVPGDAQVRSHGD 238
LNL T+L + F + L G PY C+ C F + L +P + H
Sbjct: 240 LNLKAHDHQLTLLPKLDSFTCNACGLKGDRSPYVCFQCGFMIHQDCLGLPRLININRHDH 299
Query: 239 RYQRIKLL 262
R R +L
Sbjct: 300 RVSRTSVL 307
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 65 NLILDRDSYTMLG*ILRFESDG-SLVGLCGPYTCYDCIFGVRNTFLHVPGDAQVRSHGDR 241
NL + + ++ ++ F D G PY C+ C F V H+P V H R
Sbjct: 235 NLKVHEHTLNLMPRLISFVCDACGTKGDRAPYVCHQCDFMVHKKCAHLPRVINVNHHDHR 294
>At1g11915.1 68414.m01375 expressed protein
Length = 329
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 248 FDTCHRDFVLVRRQGHVKMYC-ERQKYNHNR 159
F+T RDF+ + +QG+V YC + NH R
Sbjct: 251 FNTRTRDFLCLCKQGNVTTYCKDPSLVNHKR 281
>At5g48657.1 68418.m06020 defense protein-related weak similarity to
SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
thaliana}
Length = 245
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 476 PLFLRLFQLRITCIFVIFVPVSKLNIVIISLKYLRL 583
PLFL+L L + +F P KL +IISL Y+ L
Sbjct: 189 PLFLQLTLLCVGLLFSSMEPKGKLMKMIISLFYIIL 224
>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 556
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/48 (22%), Positives = 20/48 (41%)
Frame = +2
Query: 128 GSLVGLCGPYTCYDCIFGVRNTFLHVPGDAQVRSHGDRYQRIKLLKEQ 271
GS+ P TC C F + + +P + H R + +L+ +
Sbjct: 146 GSVDNSSYPCTCLQCCFIIHRDCIDLPSVISINRHDHRISHVDILRPE 193
>At1g68350.1 68414.m07807 hypothetical protein
Length = 162
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 445 RRRPVYMFKYYLQLKYIIFNKTNKRLKTIPVNSKRSDDPTLVQQ 314
RRRP++ L I+ RLK IP+ +RS L+QQ
Sbjct: 4 RRRPIFQRVSKLLKISILRRPIIPRLKLIPIKQRRSKRVKLLQQ 47
>At4g01925.1 68417.m00256 DC1 domain-containing protein low
similarity to UV-B light insensitive ULI3 [Arabidopsis
thaliana] GI:17225050; contains Pfam profile PF03107:
DC1 domain
Length = 399
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +2
Query: 53 PLRLNLILDRDSYTMLG*ILRFESDG-SLVGLCGPYTCYDCIFGVRNTFLHVPGDAQVRS 229
P LNL T+L + F + L G PY C+ C F + L P +
Sbjct: 166 PSLLNLKAHDHQLTLLPRLDSFTCNACGLKGDRSPYICFQCGFMIHQDCLGPPRLININR 225
Query: 230 HGDRYQRIKLL 262
H R R +L
Sbjct: 226 HDHRVVRTSVL 236
>At1g31830.2 68414.m03909 amino acid permease family protein weak
similarity to y+LAT1a (amino acid transporter) [Mus
musculus] GI:3970791; contains Pfam profile PF00324:
Amino acid permease
Length = 479
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +3
Query: 54 LLGLILFLIEIAILCWVKFYDLSPTAAWSACVVLIPVMIVFLAFAIHFYMSLATHKYEVT 233
LLG++ + +L W+ F ++ CV +I I F+ + + +K +
Sbjct: 343 LLGILFSASGVVLLSWLSFQEIVAAENLLYCVGMILEFIAFVRMRMKHPAASRPYKIPIG 402
Query: 234 VTG 242
TG
Sbjct: 403 TTG 405
>At1g31830.1 68414.m03910 amino acid permease family protein weak
similarity to y+LAT1a (amino acid transporter) [Mus
musculus] GI:3970791; contains Pfam profile PF00324:
Amino acid permease
Length = 495
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +3
Query: 54 LLGLILFLIEIAILCWVKFYDLSPTAAWSACVVLIPVMIVFLAFAIHFYMSLATHKYEVT 233
LLG++ + +L W+ F ++ CV +I I F+ + + +K +
Sbjct: 359 LLGILFSASGVVLLSWLSFQEIVAAENLLYCVGMILEFIAFVRMRMKHPAASRPYKIPIG 418
Query: 234 VTG 242
TG
Sbjct: 419 TTG 421
>At1g28760.1 68414.m03537 expressed protein ; expression supported
by MPSS
Length = 476
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 45 FSTLLGLILFLIEIAILCWVKFYDLSPTAAWSACVVLIPVMIV 173
F + GLI+ L+ + W+ FY S A VVLI + V
Sbjct: 151 FCLVAGLIVILLAPVVSSWLPFYYTSSMAVGVFLVVLIIIFQV 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,286,263
Number of Sequences: 28952
Number of extensions: 247337
Number of successful extensions: 634
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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