Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1004
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877...   134   8e-32
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429...   132   3e-31
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193...   122   2e-28
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781...   119   3e-27
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877...    93   2e-19
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174     29   3.5  
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634...    29   3.5  

>09_03_0117 -
           12486672-12486818,12487438-12487488,12487583-12487729,
           12488037-12488354,12488450-12488604,12488941-12489248,
           12490644-12491038
          Length = 506

 Score =  134 bits (323), Expect = 8e-32
 Identities = 60/86 (69%), Positives = 73/86 (84%)
 Frame = +2

Query: 2   SHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPN 181
           SHAGN LAMQEFM+ P GAS+FSEA+RMGSEVYH LK IIK K+G D+  VGDEGGFAPN
Sbjct: 204 SHAGNNLAMQEFMLLPVGASSFSEALRMGSEVYHALKGIIKAKYGQDACNVGDEGGFAPN 263

Query: 182 IQNNKDALYLIQDAIQKAGYAGKIAL 259
           +Q+N++ L L+ DAI+KAGY+GKI +
Sbjct: 264 VQDNREGLVLLMDAIEKAGYSGKIKI 289



 Score =  122 bits (294), Expect = 3e-28
 Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
 Frame = +1

Query: 253 RIGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQ 429
           +IGMDVAASEF  KDG YDL+FKN  ++    LS+ +L D+Y +F+KDFP+VSIEDPFDQ
Sbjct: 288 KIGMDVAASEFLTKDGSYDLNFKNQPNDGAHVLSAQRLCDLYKEFVKDFPIVSIEDPFDQ 347

Query: 430 DDWSAWANLTGRTPIQIVGDDLTVTN 507
           DDWS+WA+L     IQIVGDDL VTN
Sbjct: 348 DDWSSWASLQSSVNIQIVGDDLLVTN 373



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +3

Query: 507 PKRIATAVEKKACNCLLLKVNQIGSVTESIDAHL 608
           PKRIA A+ KKACN LLLKVNQIG+VTESI A L
Sbjct: 374 PKRIAEAIGKKACNALLLKVNQIGTVTESIQAAL 407



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +2

Query: 602 SLAGQKNGWGTMVSHRSGETEDTFIADLVV 691
           +L  +  GWG MVSHRSGETED FIADL V
Sbjct: 406 ALDSKAAGWGVMVSHRSGETEDNFIADLAV 435


>10_02_0022 -
           4290708-4290788,4291254-4291305,4291396-4291484,
           4291565-4291615,4291699-4291893,4292010-4292090,
           4292190-4292252,4292480-4292554,4292630-4292710,
           4292784-4292888,4292977-4293057,4293156-4293242,
           4293322-4293369,4293923-4293987,4294109-4294172,
           4294828-4294896
          Length = 428

 Score =  132 bits (318), Expect = 3e-31
 Identities = 60/87 (68%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
 Frame = +2

Query: 2   SHAGNKLAMQ-EFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAP 178
           SHAGNKLAMQ EFMI PTGA++F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAP
Sbjct: 163 SHAGNKLAMQAEFMILPTGAASFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAP 222

Query: 179 NIQNNKDALYLIQDAIQKAGYAGKIAL 259
           NIQ NK+ L L++ AI+KAGY GK+ +
Sbjct: 223 NIQENKEGLELLKTAIEKAGYTGKVVI 249



 Score =   99 bits (238), Expect = 2e-21
 Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
 Frame = +1

Query: 256 IGMDVAASEFF--KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQ 429
           IGMDVAASEF+  KD  YDL+FK  +++    +S D L +VY  F+ ++P+VSIEDPFDQ
Sbjct: 249 IGMDVAASEFYNDKDKTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQ 308

Query: 430 DDWSAWANLTGR--TPIQIVGDDLTVTN 507
           DDW  +A +T      +QIVGDDL VTN
Sbjct: 309 DDWEHYAKMTAEIGEQVQIVGDDLLVTN 336



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 24/38 (63%), Positives = 33/38 (86%)
 Frame = +3

Query: 507 PKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLARR 620
           P R+A A+++K+CN LLLKVNQIGSVTESI+A  +++R
Sbjct: 337 PTRVAKAIQEKSCNALLLKVNQIGSVTESIEAVKMSKR 374



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = +2

Query: 614 QKNGWGTMVSHRSGETEDTFIADLVV 691
           ++ GWG M SHRSGETEDTFIADL V
Sbjct: 373 KRAGWGVMTSHRSGETEDTFIADLAV 398


>06_01_0262 -
           1930552-1930632,1931096-1931152,1931236-1931287,
           1931373-1931461,1931551-1931601,1931696-1931890,
           1932015-1932095,1932205-1932267,1933045-1933119,
           1933194-1933352,1933353-1933463,1933536-1933616,
           1933721-1933807,1933920-1933967,1934357-1934421,
           1935002-1935065,1935220-1935288
          Length = 475

 Score =  122 bits (295), Expect = 2e-28
 Identities = 55/79 (69%), Positives = 66/79 (83%)
 Frame = +2

Query: 23  AMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDA 202
           A+QEFMI PTGAS+F EAM+MG EVYHHLK IIK+K+G D+T VGDEGGFAPNIQ NK+ 
Sbjct: 199 AVQEFMILPTGASSFKEAMKMGVEVYHHLKSIIKKKYGQDATNVGDEGGFAPNIQENKEG 258

Query: 203 LYLIQDAIQKAGYAGKIAL 259
           L L++ AI KAGY GK+ +
Sbjct: 259 LELLKAAIAKAGYTGKVVI 277



 Score =  103 bits (247), Expect = 1e-22
 Identities = 53/89 (59%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
 Frame = +1

Query: 256 IGMDVAASEFF--KDGKYDLDFKNPDSNPGDY-LSSDKLADVYLDFIKDFPMVSIEDPFD 426
           IGMDVAASEF+  KD  YDL+FK  D+N G + +S D L DVY  F+ ++P+VSIEDPFD
Sbjct: 277 IGMDVAASEFYSEKDKTYDLNFKE-DNNDGSHKISGDSLKDVYKSFVSEYPIVSIEDPFD 335

Query: 427 QDDWSAWANLTGR--TPIQIVGDDLTVTN 507
           QDDW+ +A LT      +QIVGDDL VTN
Sbjct: 336 QDDWATYAKLTDEIGQQVQIVGDDLLVTN 364



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = +3

Query: 507 PKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLARR 620
           P R+A A+ +K CN LLLKVNQIGSVTESI+A  +++R
Sbjct: 365 PTRVAKAISEKTCNALLLKVNQIGSVTESIEAVRMSKR 402



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = +2

Query: 614 QKNGWGTMVSHRSGETEDTFIADLVV 691
           ++ GWG M SHRSGETEDTFIADL V
Sbjct: 401 KRAGWGVMASHRSGETEDTFIADLSV 426


>03_02_0365 -
           7816966-7817046,7817441-7817492,7817590-7817678,
           7817762-7817854,7817900-7818094,7818172-7818249,
           7818353-7818415,7818806-7818880,7818958-7819038,
           7819329-7819409,7819516-7819602,7819682-7819729,
           7820317-7820381,7820566-7820629,7821254-7821322
          Length = 406

 Score =  119 bits (286), Expect = 3e-27
 Identities = 52/77 (67%), Positives = 65/77 (84%)
 Frame = +2

Query: 29  QEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDALY 208
           QEFMI PTGAS+F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAPNIQ NK+ L 
Sbjct: 138 QEFMILPTGASSFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 197

Query: 209 LIQDAIQKAGYAGKIAL 259
           L++ AI+KAGY GK+ +
Sbjct: 198 LLKTAIEKAGYTGKVVI 214



 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
 Frame = +1

Query: 256 IGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQD 432
           IGMDVAASEF+ +D  YDL+FK  +++    +S D L +VY  F+ ++P+VSIEDPFDQD
Sbjct: 214 IGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDPFDQD 273

Query: 433 DWSAWANLTGR--TPIQIVGDDLTVTN 507
           DW  +A +T      +QIVGDDL VTN
Sbjct: 274 DWVHYAKMTEEIGDQVQIVGDDLLVTN 300



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
 Frame = +3

Query: 480 CW**-SNGDKPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLARR 620
           CW   SN    +R+A A++ KACN LLLKVNQIGSVTESI+A  +++R
Sbjct: 305 CWLQYSNQFDLQRVAKAIKDKACNALLLKVNQIGSVTESIEAVKMSKR 352



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = +2

Query: 614 QKNGWGTMVSHRSGETEDTFIADLVV 691
           ++ GWG M SHRSGETEDTFIADL V
Sbjct: 351 KRAGWGVMTSHRSGETEDTFIADLAV 376


>03_02_0477 -
           8770905-8770985,8771164-8771361,8771939-8772025,
           8772094-8772179,8772270-8772368,8772431-8772551,
           8773251-8773331,8773643-8773723,8773972-8774088,
           8774185-8774256,8774621-8775055
          Length = 485

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = +2

Query: 2   SHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPN 181
           +HAGN L +QE MI P GA  F EAM+MGSE YHHLK II EK+G +S  +GD+GGFAPN
Sbjct: 199 THAGNSLPIQEIMILPVGAKNFEEAMQMGSETYHHLKDIILEKYGSNSCNIGDDGGFAPN 258

Query: 182 IQNNKD-ALYLIQDAIQKAGYAGKIAL 259
           I    + A+     A+    Y  +  L
Sbjct: 259 ISRQWNYAIQYCWSAVNLMAYINRTTL 285



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 26/70 (37%), Positives = 43/70 (61%)
 Frame = +1

Query: 298 KYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQ 477
           KYD++FK  + +   + ++D L ++Y     ++P+VSIE PFD+DDW      T     Q
Sbjct: 305 KYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQ 364

Query: 478 IVGDDLTVTN 507
           +VGDDL +++
Sbjct: 365 VVGDDLLMSD 374



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = +3

Query: 507 PKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLARRTDGAQWSL 644
           P+RI  AV +  CN L+LK NQ+G+VTE+I+   + R+   A W +
Sbjct: 375 PERIKRAVNEYTCNALVLKANQVGTVTEAIE---VVRQAKDAHWGV 417



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = +2

Query: 626 WGTMVSHRSGETEDTFIADLVV 691
           WG MVSHRSG+T+D+FIADL V
Sbjct: 415 WGVMVSHRSGDTDDSFIADLAV 436


>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
          Length = 514

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 537 KACNCLLLKVNQIGSVTESIDAHLLARRTDGAQWSLTDLVR 659
           K  N  L +++ +  VT+ I+ H +    D A W +  L+R
Sbjct: 451 KVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIR 491


>02_04_0123 +
           19961904-19962096,19962836-19963029,19963334-19963465,
           19963921-19964038,19964248-19964484,19964576-19964658,
           19964777-19965004,19965394-19965470,19965590-19965626,
           19965786-19965952,19966156-19966234,19966301-19966378,
           19967459-19967575,19967999-19968379,19968453-19968590,
           19968680-19968769,19968832-19968840
          Length = 785

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = -2

Query: 262 CQCDLASIASFLDSILNQIKSILVVLYVWSETTFITNSRRVQSKLLLNDLFQMVVHF*TH 83
           CQ +L+S ++   S L+    ++ V  V  ++  + N   V+ K+ +  L Q+++H   H
Sbjct: 384 CQNELSSNSALSLSELSDEDCLVTVDLV--QSLIVENLSWVKEKISIQSLLQLLIHPACH 441

Query: 82  PH 77
           PH
Sbjct: 442 PH 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,996,266
Number of Sequences: 37544
Number of extensions: 456949
Number of successful extensions: 1174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)