Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1004
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07) 89 4e-18
SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0) 88 7e-18
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 31 1.2
SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51) 29 2.7
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 4.7
SB_52809| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_54101| Best HMM Match : MORN (HMM E-Value=2.8e-11) 28 6.2
SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_28791| Best HMM Match : DUF1656 (HMM E-Value=0.59) 28 8.3
>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
Length = 133
Score = 88.6 bits (210), Expect = 4e-18
Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 2/89 (2%)
Frame = +2
Query: 2 SHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPN 181
+HA + + +QEFMI P GA +F +A G+ VYH LKK++K+K GL +T +GDEGGFAPN
Sbjct: 8 AHADSDVDIQEFMIAPIGAESFKQAYEWGAAVYHSLKKVLKDK-GL-ATGLGDEGGFAPN 65
Query: 182 IQNNKDALYLIQDAIQKAGY-AGK-IALA 262
+ +N AL LI DAI+ AG+ GK +ALA
Sbjct: 66 LPSNAAALDLILDAIKAAGFEPGKDVALA 94
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 256 IGMDVAASEFFKDGKYDLD 312
+ +DVAASEFF+DGKY +
Sbjct: 93 LALDVAASEFFEDGKYTFE 111
>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
Length = 284
Score = 87.8 bits (208), Expect = 7e-18
Identities = 46/86 (53%), Positives = 59/86 (68%)
Frame = +2
Query: 2 SHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPN 181
SHAGNKLAMQEFM+ PTGAS F EAMRMG+E+Y +LKK++KEK+G+
Sbjct: 55 SHAGNKLAMQEFMLLPTGASNFREAMRMGAEIYQNLKKVVKEKYGI-------------- 100
Query: 182 IQNNKDALYLIQDAIQKAGYAGKIAL 259
D L L++ AI+KAGY GKI++
Sbjct: 101 -----DGLELLKVAIEKAGYTGKISI 121
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/31 (87%), Positives = 27/31 (87%)
Frame = +2
Query: 599 CSLAGQKNGWGTMVSHRSGETEDTFIADLVV 691
C LA Q NGWG MVSHRSGETEDTFIADLVV
Sbjct: 187 CKLA-QSNGWGVMVSHRSGETEDTFIADLVV 216
Score = 57.6 bits (133), Expect = 9e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +3
Query: 516 IATAVEKKACNCLLLKVNQIGSVTESIDAHLLAR 617
I TA+EKKACNCLLLKVNQIGSVTESI A LA+
Sbjct: 158 IQTAIEKKACNCLLLKVNQIGSVTESIKACKLAQ 191
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +1
Query: 400 MVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNLSVSLLQLR 534
+VSIED FDQD W AW+ LTG IQIVG + + + L L+
Sbjct: 129 VVSIEDAFDQDHWDAWSKLTGNVDIQIVGIQTAIEKKACNCLLLK 173
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 308 RSYFPSLKNSEAATSMPMRSCQHSQLSG*HPESDKEHP-CCFVCLERNH 165
RS F K + SC HSQ H +E P CCF CL+R H
Sbjct: 861 RSVFSDFKEKNVTPN----SCHHSQREADHA---RECPRCCFSCLKRGH 902
>SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51)
Length = 486
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 516 IATAVEKKACNCLLLKVNQIGSVTESIDAHLLARRTDGAQWSLTDLVRPKIPLL 677
I + +E+ C C L+K + ES A LL T G +L DLV P++P++
Sbjct: 20 IESYMERLECYCDLMKTPE-----ESKVALLLCGLTGGQYETLRDLVSPEVPIM 68
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 228 WIAS*IR*RASLLFCMFGAKPPSSPTAVESNPNFSLMIFFK 106
W + ++ R LL C F P +SP+A+E N L +F K
Sbjct: 40 WASVKLKGRKELLLCSFYRVPNNSPSALEVLSNAILDVFNK 80
>SB_52809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 152 VGDEGGFAPNIQNNKDALYLIQDAIQKAGY 241
V D+G ++P + + AL +QDA+ GY
Sbjct: 55 VTDDGSYSPPLDKPETALEYLQDAVSGCGY 84
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 228 WIAS*IR*RASLLFCMFGAKPPSSPTAVESNPNFSLMIFFK 106
W + ++ R LL C F P +SP+A+E N L +F K
Sbjct: 292 WASVKLKGRKELLLCSFYRVPNNSPSALEVLSNAILDVFNK 332
>SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 152 VGDEGGFAPNIQNNKDALYLIQDAIQKAGY 241
V D+G ++P + + AL +QDA+ GY
Sbjct: 192 VTDDGSYSPPLDKPETALEYLQDAVSGCGY 221
>SB_54101| Best HMM Match : MORN (HMM E-Value=2.8e-11)
Length = 99
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -2
Query: 439 TNHPGQKDPQWTPWENL**SPNRHQLIYLMTGSRL--DWN 326
T HP ++P W W+ H +Y + G + +WN
Sbjct: 4 TKHPKTREPLWKEWDYKAQKKGVHHTVYSVNGDQYTGEWN 43
>SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -2
Query: 439 TNHPGQKDPQWTPWENL**SPNRHQLIYLMTGSRL--DWN 326
T HP ++P W W+ H +Y + G + +WN
Sbjct: 4 TKHPKTREPLWKEWDYKAQKKGVHHTVYSVNGDQYTGEWN 43
>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 549 CLLLKVN-QIGSVTESIDAHLLARRTDGAQWSLTD 650
C + +N QI S +D H+ + GAQW + D
Sbjct: 81 CAITSINFQISSKINRLDNHVSGKSKKGAQWMMPD 115
>SB_28791| Best HMM Match : DUF1656 (HMM E-Value=0.59)
Length = 199
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 220 ILNQIKSILVVLYVWSETTFITNSRRV 140
+ ++K LVV+Y +SET F N+ R+
Sbjct: 151 VFGRLKDFLVVVYRYSETAFYDNTDRL 177
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,493,625
Number of Sequences: 59808
Number of extensions: 496020
Number of successful extensions: 1174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -