Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1003
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 129 2e-31
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 31 0.068
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.36
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 3.4
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 3.4
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.9
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 25 5.9
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 5.9
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 24 7.8
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 24 7.8
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 129 bits (311), Expect = 2e-31
Identities = 53/82 (64%), Positives = 70/82 (85%)
Frame = +2
Query: 8 NLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRI 187
NL+S G CFGKFTKTNKFRLHITAL YI+ YA +K+WVK + E FLYG+H++K+ +GRI
Sbjct: 62 NLMSLGICFGKFTKTNKFRLHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGRI 121
Query: 188 TENTPKHQGVVVLTMSDIPIGF 253
T++TP+HQGVV+ +M+D P+GF
Sbjct: 122 TDDTPQHQGVVIYSMNDTPLGF 143
Score = 50.8 bits (116), Expect = 8e-08
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3
Query: 258 TSRTTAECRHADPLATIVFHQADVGEYIRSEDTL 359
T+R+T E R +P A + FHQADVGEY+R EDTL
Sbjct: 146 TARSTLELRRLEPTAIVAFHQADVGEYLRDEDTL 179
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 31.1 bits (67), Expect = 0.068
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -3
Query: 344 AYIFSYVGLVEDNRRQRISVSTFCRRS*STQSQSEYLTSLIPPHLDVSVYFLLSGP 177
++IF V++ RR+ S S FCR + Y S PH+D + + L GP
Sbjct: 677 SFIFGEHKSVKE-RRKYFSSSKFCRENFFYDKDVVYCMSFFSPHMDFNTFNLNIGP 731
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 28.7 bits (61), Expect = 0.36
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 169 KWLGPDNRKYTETSRCG-GINDVRYSDWLCVLQER 270
KW+ PD K ET +C I DV+ S +L L R
Sbjct: 150 KWVAPDKAKLNETWKCYLHIQDVKKSYFLASLTSR 184
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 3.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 11 LVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLY 151
L++ G + K K L I A +Y Y KVW P+ +LY
Sbjct: 338 LLACGATYTKDLKPTNTLL-IAASSYGQKYGAAKVWNIPTVHHSWLY 383
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 300 PKDQRVDILPSFLKYAKPIGISDIVNTTTP*CFGVFSVIRPK 175
P+DQ ++LP+F A+ I + +V TP C +F + K
Sbjct: 401 PEDQISELLPAFSVVARAIIKNKLVE--TPECLDLFKIFIQK 440
>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 5.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 155 HHIIKSGLGRITENTPKH 208
HH+ K G+GR+ E +H
Sbjct: 216 HHVDKYGIGRVVEMAMEH 233
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 174 PLLMMWCPYKNCCSADGFTHTLNGA 100
P L + ++N CSAD +LNG+
Sbjct: 65 PTLFAFITFENKCSADNAIASLNGS 89
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 199 TETSRCGGINDVRYSDWLCVLQERRQNVDTLILWRRLSS 315
+E +C ++ + + L E+R N LILW S
Sbjct: 349 SEMRQCAALHGCTFETNVSTLTEKRVNFRKLILWASCGS 387
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 38 KFTKTNKFRLHITALT-YISPYAPFKVWVKPSAEQQFLYGH 157
+FT R L ++ P +++KP+ +Q+ +YGH
Sbjct: 432 EFTSNFTLRRKANILAKHLPPRTDIVLFIKPTHQQENVYGH 472
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 357 AYPQSVYILLRRPGGRQSSPKD 292
AY Q + +LLRRP GR++ P D
Sbjct: 305 AYRQ-MSLLLRRPPGREAYPGD 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,990
Number of Sequences: 5004
Number of extensions: 35572
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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