Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1003
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637 85 2e-17
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 29 1.8
10_08_0962 + 21880919-21880983,21881100-21881487,21881807-218819... 27 7.5
03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967... 27 7.5
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 26 9.9
02_01_0407 - 2963907-2964063,2965158-2965311,2965427-2968527,296... 26 9.9
01_05_0475 - 22571571-22572466,22572626-22572947 26 9.9
>07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637
Length = 216
Score = 85.4 bits (202), Expect = 2e-17
Identities = 38/81 (46%), Positives = 54/81 (66%)
Frame = +2
Query: 11 LVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRIT 190
L GT GKFT F L + AL ++ +A +VW+KP E+ FL+G+ + KS L RIT
Sbjct: 71 LAGVGTPIGKFTHGGAFHLTVHALDLLAAHARRRVWLKPDTERSFLFGNSVPKSSLARIT 130
Query: 191 ENTPKHQGVVVLTMSDIPIGF 253
ENT + GVVV++M+D+P+GF
Sbjct: 131 ENTKANDGVVVMSMADVPLGF 151
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 261 SRTTAECRHADPLATIVFHQADVGEYIRSEDTL 359
+R+ +CR AD A +V HQ+D GEY+R E+ L
Sbjct: 155 ARSAQDCRKADTNAVVVLHQSDAGEYLRREEEL 187
>03_06_0222 +
32466379-32466741,32466849-32466948,32467443-32467547,
32467627-32467789,32467995-32468115,32468625-32468705,
32468813-32468911,32468955-32468986,32468987-32469137,
32469477-32469563,32470290-32470409,32470514-32470645,
32470743-32470840,32470919-32471042,32471126-32471233,
32471822-32471957,32472751-32472861,32472963-32473026,
32473133-32473205,32473762-32473938,32474012-32474122,
32474189-32474449,32474811-32474981,32475073-32475228,
32475590-32475823,32475936-32476103,32476316-32476425,
32476513-32477041
Length = 1394
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = +2
Query: 191 ENTPKHQGVVVL-----TMSDIPIGFAYFKNDGRMSTR 289
E TPK +G++ L T+SD+ +G+ YF+ D + T+
Sbjct: 760 EVTPKVEGILKLHGIRWTLSDLLVGYQYFEFDTKRKTK 797
>10_08_0962 +
21880919-21880983,21881100-21881487,21881807-21881931,
21882374-21882374,21882891-21883115,21888956-21889083,
21889176-21889227,21890205-21890351,21890444-21890566,
21890648-21890722,21890812-21890931,21892546-21892632,
21893115-21893183,21893262-21893353,21893465-21893584,
21893725-21893767,21893848-21893910,21894091-21894162,
21894247-21894291,21894354-21894424,21894508-21894573,
21894715-21894799
Length = 753
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 113 VWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPI 247
VW+K SA Q++LY + I+ + LG TP V ++ + P+
Sbjct: 410 VWLKISAAQEYLYTNLIMSNVLGD-EPGTPLAASQVARSICNHPV 453
>03_03_0028 +
13893813-13893959,13894961-13895264,13896557-13896761,
13897428-13897646,13897734-13897869,13899130-13899387,
13899402-13899686
Length = 517
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -3
Query: 362 RKRILRAYIFSYVGLVEDNRRQRISVSTFCRRS*STQSQSEYLTSLIPPHLDVSVYFLLS 183
R RI+ A +F + L++D + ++ CR + + Q S++P ++ LLS
Sbjct: 255 RARIMLAKVFGLITLMDDTYDVQDTLDECCRFNETIQRWDNGAVSILPEYMHAYYIKLLS 314
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 321 PGGRQSSPKDQRVDILP 271
P Q SP DQR DILP
Sbjct: 392 PAKAQPSPADQRTDILP 408
>02_01_0407 -
2963907-2964063,2965158-2965311,2965427-2968527,
2968684-2968697
Length = 1141
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 171 LLMMWCPYKNCCSADGFTHTLNGA*GDM 88
L M W +NCC +G T NGA D+
Sbjct: 54 LSMSWRNDRNCCVWEGITCNRNGAVTDI 81
>01_05_0475 - 22571571-22572466,22572626-22572947
Length = 405
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 226 NDVRYSDWLCVLQERRQNVDTLILWRRLSST 318
N++ YS+ C++ Q+ + LI WRR S+
Sbjct: 161 NNLIYSNGKCLIVVELQHDNDLIAWRRFQSS 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,164
Number of Sequences: 37544
Number of extensions: 237833
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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