Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1003
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6282| Best HMM Match : No HMM Matches (HMM E-Value=.)              141   2e-34
SB_13692| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.82 
SB_13691| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.82 
SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)                   27   4.4  
SB_21013| Best HMM Match : FeS (HMM E-Value=9)                         27   7.7  
SB_6210| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_6282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score =  141 bits (341), Expect = 2e-34
 Identities = 59/83 (71%), Positives = 73/83 (87%)
 Frame = +2

Query: 5   DNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGR 184
           DNL+S GTC GKFTK+ KF+LHITAL +++PYA +KVWVKP AEQ FLYG+H+ KSGLGR
Sbjct: 81  DNLISLGTCLGKFTKSEKFKLHITALDFLAPYAKYKVWVKPGAEQTFLYGNHVTKSGLGR 140

Query: 185 ITENTPKHQGVVVLTMSDIPIGF 253
           ITENTP++QGVV+ +MSD P+GF
Sbjct: 141 ITENTPQYQGVVIYSMSDSPLGF 163



 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 258 TSRTTAECRHADPLATIVFHQADVGEYIRSEDTLT 362
           T+R+T +CR A+P   +VFHQADVGEY+RSEDTLT
Sbjct: 166 TARSTQDCRKANPTDVVVFHQADVGEYLRSEDTLT 200


>SB_13692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 2   PDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLG 181
           PDN+  +  C  K  + N    HI+ L +     PF++W +    Q+  + H  IK G+ 
Sbjct: 225 PDNIFLS--CPLKLFEDNSTEFHISYLAFFKDRKPFELWEQTVYFQEGRFSH--IKQGIY 280

Query: 182 R 184
           R
Sbjct: 281 R 281


>SB_13691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 2   PDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLG 181
           PDN+  +  C  K  + N    HI+ L +     PF++W +    Q+  + H  IK G+ 
Sbjct: 225 PDNIFLS--CPLKLFEDNSTEFHISYLAFFKDRKPFELWEQTVYFQEGRFSH--IKQGIY 280

Query: 182 R 184
           R
Sbjct: 281 R 281


>SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)
          Length = 580

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 196 IFCYPAQATFDDVVSIQELLFRRRLHPHF 110
           + C+  + +FDD++++ E  + + L P+F
Sbjct: 382 LICFKREFSFDDIMTLWEAFWTQNLSPNF 410


>SB_21013| Best HMM Match : FeS (HMM E-Value=9)
          Length = 123

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 187 YPAQATFDDVVSIQELLFRRRLHPHFERRIG*YVSQSCNVQPKFICLCE 41
           Y A+  F + +  +E    RRL   FER     +  SCN+Q  F+  C+
Sbjct: 79  YTARCLFGETLIRREAYSGRRL---FERSAS--IKNSCNLQKNFLTACK 122


>SB_6210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +2

Query: 122 KPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFAYFKNDGRMSTR*SFG 301
           +P  +Q  L+ +  + SGLGR+   +PK     V  + D   GF     D   S   +F 
Sbjct: 97  EPLTKQHVLHDYKDVFSGLGRLPV-SPKLTNTKVFPVVDAKDGFLQDVLDEPSSYLTTF- 154

Query: 302 DDCLPPGRRR 331
             C P GR R
Sbjct: 155 --CTPYGRHR 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,183,062
Number of Sequences: 59808
Number of extensions: 285391
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)