Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1003
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-17|AAB37628.1|  180|Caenorhabditis elegans Hypothetical p...   126   6e-30
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z46812-4|CAN86624.1|  405|Caenorhabditis elegans Hypothetical pr...    30   0.55 
U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical ...    27   5.1  
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    27   6.8  
U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical pr...    26   9.0  
U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical pr...    26   9.0  
U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AC024138-1|AAU05565.1|  319|Caenorhabditis elegans Hypothetical ...    26   9.0  

>U80437-17|AAB37628.1|  180|Caenorhabditis elegans Hypothetical
           protein C43E11.9 protein.
          Length = 180

 Score =  126 bits (304), Expect = 6e-30
 Identities = 52/81 (64%), Positives = 69/81 (85%)
 Frame = +2

Query: 11  LVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRIT 190
           L+S GTC GKFTK+ KF L ITAL Y++PYA FKVW+KP+AEQQFLYG++I+KSG+ R+T
Sbjct: 63  LLSFGTCLGKFTKSKKFHLQITALDYLAPYAKFKVWLKPNAEQQFLYGNNILKSGIARMT 122

Query: 191 ENTPKHQGVVVLTMSDIPIGF 253
           + TP H G+VV +M+D+P+GF
Sbjct: 123 DGTPTHAGIVVYSMTDVPLGF 143



 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +3

Query: 258 TSRTTAECRHADPLATIVFHQADVGEYIRSEDTL 359
           +++ T++ + ADP A +V HQ D+GEY+R+E  L
Sbjct: 146 SAKGTSDSKRADPTALVVLHQCDLGEYLRNESHL 179


>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 135 NNSSCMDTTSSKVAWAG*QKIHRNIKVWWY*RCQIFRLALRTSRTTAECRHADPLATIVF 314
           +N  C+D +S K+ W+   K+H   +   Y    +  L L      +  +H   L+ +  
Sbjct: 534 DNVFCVDLSSKKILWSTDYKLH-FFQSMGYSNTTL--LLLNQKFIVSRIKHGKDLSNVNM 590

Query: 315 HQADVGEYIRSE 350
           H +D+G  I SE
Sbjct: 591 HASDIGFSITSE 602


>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 135 NNSSCMDTTSSKVAWAG*QKIHRNIKVWWY*RCQIFRLALRTSRTTAECRHADPLATIVF 314
           +N  C+D +S K+ W+   K+H   +   Y    +  L L      +  +H   L+ +  
Sbjct: 534 DNVFCVDLSSKKILWSTDYKLH-FFQSMGYSNTTL--LLLNQKFIVSRIKHGKDLSNVNM 590

Query: 315 HQADVGEYIRSE 350
           H +D+G  I SE
Sbjct: 591 HASDIGFSITSE 602


>Z46812-4|CAN86624.1|  405|Caenorhabditis elegans Hypothetical
           protein ZK675.3a protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 64  VAHYSFDLHITLCAVQSVGEAVCGTTVLVWTPHHQKWLGPDNRKYTETSRCGGINDVRYS 243
           +A Y  D H+    + +  E V   ++LV    HQKW  P N   T   RC     + ++
Sbjct: 140 LARYPTDDHLVDSGLMTKEEMVMFKSILVHVDPHQKWWVPLNWIQTMMVRCFEKGTLTHT 199

Query: 244 DWLCVL 261
           + L VL
Sbjct: 200 NELRVL 205


>U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical
           protein K04G7.4a protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 158 HIIKSGLGRITENTPKHQGVVVLTMSDIP-IGFAYFKN 268
           HI+ +G G + E TP    V    M D   IG  YFK+
Sbjct: 167 HILNTGQGVVLERTPHSDFVFANAMRDKNYIGHEYFKH 204


>AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical
           protein F44E7.5a protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 276 ECRHADPLATIVFHQADVGEYIRSEDTL 359
           +C+HA+ +AT+++       YI SED L
Sbjct: 226 KCKHAENIATLLYSANWKRVYIHSEDVL 253


>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 65  LHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITE 193
           +HI     ISP    K  VK     Q L+G++I+ + L R  E
Sbjct: 33  VHIRTNDMISPEERRKSRVKSLKHAQLLHGYYILSNNLFRFLE 75


>U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical
           protein F25B5.6c protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 282 DILPSFL-KYAKPIGISDIVNTTT 214
           D  PS L KY KP+GIS IV+  T
Sbjct: 369 DRCPSTLIKYLKPLGISQIVSCPT 392


>U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical
           protein F25B5.6a protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 282 DILPSFL-KYAKPIGISDIVNTTT 214
           D  PS L KY KP+GIS IV+  T
Sbjct: 395 DRCPSTLIKYLKPLGISQIVSCPT 418


>U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical
           protein F25B5.6b protein.
          Length = 521

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 282 DILPSFL-KYAKPIGISDIVNTTT 214
           D  PS L KY KP+GIS IV+  T
Sbjct: 406 DRCPSTLIKYLKPLGISQIVSCPT 429


>AC024138-1|AAU05565.1|  319|Caenorhabditis elegans Hypothetical
           protein H08J11.2 protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 309 QSSPKDQRVDILPSFLKYAKPIGISDIVNTTTP 211
           QS+ +D R+D+L    K  K    +  ++TTTP
Sbjct: 133 QSASEDDRLDLLKELAKIGKSNTSTSQMSTTTP 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,588,591
Number of Sequences: 27780
Number of extensions: 208494
Number of successful extensions: 510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)