Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1003
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15770.1 68417.m02401 60S ribosome subunit biogenesis protein...    74   4e-14
At2g02720.1 68415.m00214 pectate lyase family protein similar to...    29   0.89 
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela...    29   0.89 
At1g67140.1 68414.m07638 expressed protein                             29   1.2  
At1g14420.1 68414.m01710 pectate lyase family protein similar to...    29   1.6  
At5g04540.1 68418.m00454 expressed protein                             27   6.3  

>At4g15770.1 68417.m02401 60S ribosome subunit biogenesis protein,
           putative contains similarity to 60S ribosome subunit
           biogenesis protein NIP7 (Swiss-Prot:Q08962)
           [Saccharomyces cerevisiae]
          Length = 96

 Score = 73.7 bits (173), Expect = 4e-14
 Identities = 30/59 (50%), Positives = 44/59 (74%)
 Frame = +2

Query: 77  ALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGF 253
           +L  ++  A  KVW+KP++E  FLYG+H++K GLGRIT++     GVVV +MSD+P+GF
Sbjct: 2   SLNILAANAKHKVWLKPTSEMSFLYGNHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGF 60



 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +3

Query: 261 SRTTAECRHADPLATIVFHQADVGEYIRSEDTL 359
           +++T +CR  DP   +V HQAD+GEY+R ED L
Sbjct: 64  AKSTQDCRKLDPNGIVVLHQADIGEYLRGEDDL 96


>At2g02720.1 68415.m00214 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 455

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 92  SPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKH 208
           +PY  +K W   S +  FL G + ++SG       TPK+
Sbjct: 383 TPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKN 421


>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
           similar to nuclear matrix constituent protein 1 (NMCP1)
           [Daucus carota] GI:2190187
          Length = 391

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 148 VWTPHHQKWLGPDNRKYTETSRCGGINDVRYSD 246
           ++TP  ++W+ P     +ET + GG+ + R +D
Sbjct: 1   MFTPQRKQWMSPAMTPRSETHKIGGVTNPRNAD 33


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 193  FCYPAQATFDDVVSIQELLFRRRLHPHFERRIG*YVSQSCNVQPKFICLCELSEACPRRY 14
            FCYPA     D++    ++    L   F R    Y  +   V  KFI   ++S+ CP+ +
Sbjct: 1468 FCYPAIGISPDIMYFMVII---PLFDEFLRLYMPYALEKMRVLMKFIFFQQISQNCPKDF 1524


>At1g14420.1 68414.m01710 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 459

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +2

Query: 11  LVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRIT 190
           ++S G  F      N+    IT   Y +PY  +K W   S    FL G + ++SG     
Sbjct: 363 IISQGNRF--IAPPNEEAKQITKREY-TPYGEWKSWNWQSEGDYFLNGAYFVQSGKANAW 419

Query: 191 ENTPK 205
            + PK
Sbjct: 420 SSKPK 424


>At5g04540.1 68418.m00454 expressed protein
          Length = 833

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 148 VWTPHHQKWLGPDNRKYTET-SRCGGINDVRYSDWLCVLQERRQNVDTL 291
           +W   H +W  P     TET  +C  +  V+YS+     +E  + VD L
Sbjct: 642 LWPQFHLRWACPVEPNVTETEDQCRAMT-VKYSEMKKEKEEAERKVDEL 689


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,932,739
Number of Sequences: 28952
Number of extensions: 189215
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)