Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1002
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 151 4e-37
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 2e-35
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 9e-28
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 4e-27
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 98 7e-21
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 85 4e-17
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 82 4e-16
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 81 9e-16
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 1e-14
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 52 4e-07
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 37 0.014
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 32 0.54
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.71
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 31 1.2
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 30 1.6
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.6
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 8.8
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 151 bits (367), Expect = 4e-37
Identities = 70/107 (65%), Positives = 82/107 (76%)
Frame = +3
Query: 189 QGLHFPSCHPQFHAARRGLHQPNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 368
+G F PQF + NGTGGKSIYG KFEDENF LKHTG GVLSMAN+G +TN
Sbjct: 182 KGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTN 241
Query: 369 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKR 509
GSQFF+TT KT WLDG+HVVFGNV+EG +VV+++E GSQSGK SK+
Sbjct: 242 GSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKMEAVGSQSGKASKK 288
Score = 111 bits (267), Expect = 5e-25
Identities = 48/71 (67%), Positives = 54/71 (76%)
Frame = +1
Query: 55 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQ 234
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT EKGFGYKGS FHR+IP FM Q
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 235 GGDFTNQTALG 267
GGDFT G
Sbjct: 197 GGDFTKHNGTG 207
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 146 bits (354), Expect = 2e-35
Identities = 69/107 (64%), Positives = 80/107 (74%)
Frame = +3
Query: 189 QGLHFPSCHPQFHAARRGLHQPNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 368
+G F P F + +GTGGKSIYG KF DENF LKHTGPG+LSMANAG TN
Sbjct: 48 KGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTN 107
Query: 369 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKR 509
GSQFF+ T KTSWLDG+HVVFG+V +GM+VVK+IE GS SGKTSK+
Sbjct: 108 GSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIEKVGSDSGKTSKK 154
Score = 110 bits (264), Expect = 1e-24
Identities = 48/68 (70%), Positives = 53/68 (77%)
Frame = +1
Query: 64 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 243
+FD+ + AP G+IV+ELR DV PKT ENFRALCTGEKGFGYKGS FHRVIP FM QGGD
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGD 65
Query: 244 FTNQTALG 267
FT G
Sbjct: 66 FTRGDGTG 73
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 120 bits (290), Expect = 9e-28
Identities = 55/68 (80%), Positives = 59/68 (86%)
Frame = +3
Query: 255 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 434
+GTGGKSIYG KF DENF L+H G G LSMANAG DTNGSQFFITTVKT WLDGRHVVFG
Sbjct: 112 DGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFG 171
Query: 435 NVVEGMEV 458
V++GMEV
Sbjct: 172 KVLKGMEV 179
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 18/88 (20%)
Frame = +1
Query: 58 RVFFDVTVDDAPLGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GEKGF 183
+VFFD+T+ G+I +I+ + + E NFR CT +KGF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 184 GYKGSIFHRVIPNFMLQGGDFTNQTALG 267
GYK SIFHRVI +FM+QGGDFT G
Sbjct: 88 GYKNSIFHRVIQDFMIQGGDFTKGDGTG 115
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 118 bits (285), Expect = 4e-27
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = +3
Query: 255 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 434
+GTGG SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+KTSWLDG H FG
Sbjct: 93 DGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFG 152
Query: 435 NVVEGMEVVKQIE 473
V+EGM+VV++IE
Sbjct: 153 KVLEGMDVVRRIE 165
Score = 87.4 bits (207), Expect = 1e-17
Identities = 38/70 (54%), Positives = 49/70 (70%)
Frame = +1
Query: 58 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQG 237
+V+ DV++ P G++++ L D PKT NF AL E+GFGYK SIFHRVI NFM+QG
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 238 GDFTNQTALG 267
GDFTN+ G
Sbjct: 87 GDFTNKDGTG 96
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 97.9 bits (233), Expect = 7e-21
Identities = 45/73 (61%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = +3
Query: 255 NGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVF 431
+GTGG+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T WLD +H VF
Sbjct: 2 DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61
Query: 432 GNVVEGMEVVKQI 470
G VV+GM+V +QI
Sbjct: 62 GRVVKGMDVAQQI 74
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 85.4 bits (202), Expect = 4e-17
Identities = 36/72 (50%), Positives = 50/72 (69%)
Frame = +3
Query: 258 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 437
G GG+S+YG FEDE+F++ H GV+ MAN G TNGSQF+IT W+D ++V FG
Sbjct: 46 GIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQ 105
Query: 438 VVEGMEVVKQIE 473
V+EG+ V+ +E
Sbjct: 106 VIEGLNVLDVLE 117
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 342 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 473
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLE 44
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 82.2 bits (194), Expect = 4e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +3
Query: 315 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 473
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELE 240
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 81.0 bits (191), Expect = 9e-16
Identities = 42/74 (56%), Positives = 51/74 (68%)
Frame = +3
Query: 255 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 434
NGTGG+SIYG F DE F KH P +LSMAN G +TNGSQFFI HVVFG
Sbjct: 25 NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFG 74
Query: 435 NVVEGMEVVKQIET 476
+V++G E+V+QIE+
Sbjct: 75 HVIQGEELVRQIES 88
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +3
Query: 333 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 470
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Frame = +1
Query: 97 GKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 210
G+++ EL +D PKT ENFRALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 48.0 bits (109), Expect = 8e-06
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +1
Query: 94 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDF 246
LG+I IEL +D P + NF A + G+ Y G+ FHRVIP FM+QGG F
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGGGF 79
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +3
Query: 318 HTGPGVLSMANAGA-DTNGSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVKQI 470
H G L+MA D+ SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 101 HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +3
Query: 318 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 434
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 94 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVI 216
+G I IEL TPK C NF LC +G+ Y +IFHR++
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV 49
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +3
Query: 420 HVVFGNVVEGMEVVKQIET 476
HVVFG+V++G E+V+QIE+
Sbjct: 3 HVVFGHVIQGEELVRQIES 21
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.71
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -3
Query: 460 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 323
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 0.94
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 433 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 323
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 463 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 323
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 122 VTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTSPTKRHWGKVHL 280
VT LP VK + + ASVT P S+ P+S TS H HL
Sbjct: 1224 VTQLPVSVKHLLTSVMHLHASVTHLPASVTQLPVSAKHLPTSVMHLHASVTHL 1276
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 88 APLGKIVIELRSDVTPKTCENFRALCTG 171
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -3
Query: 436 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 323
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -3
Query: 436 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 323
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 481 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 302
P+ TTS PST+ P+T ++ T N AP+ + RT + LR
Sbjct: 87 PRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSN--STTRAPSTSTPRTGSTITLRTST 144
Query: 301 SS 296
+S
Sbjct: 145 TS 146
>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 207 SCHPQFHAARRGLHQPNGTGGKSIYGNKFEDE 302
S HP H RG + P + +SI KF+DE
Sbjct: 8 SQHPMEHLESRGHNTPRRSSSRSIKRKKFDDE 39
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 167 VHRARKFSHVLGV--TSLLSSITIFPSGASSTVTSKNTRGRDILPV 36
+ + KF+H+ G+ TS T+F +T T TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -3
Query: 493 PDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 323
P P + TT+ P TT P+TT P + T + P + P +T P
Sbjct: 1767 PPHSPPTTTTTTTTTPETTAPRTT-TPETTTPETTTPRTTTPETTKPRTTTPKTTTP 1822
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,586,245
Number of Sequences: 59808
Number of extensions: 525507
Number of successful extensions: 1504
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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