Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1001
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.001
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 36 0.008
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.010
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 35 0.014
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.024
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.024
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.042
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.073
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.073
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 32 0.097
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.13
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 31 0.17
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.17
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.22
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 30 0.30
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 30 0.30
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 30 0.30
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.90
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.2
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar... 28 1.6
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 2.1
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 27 3.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.6
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.8
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.8
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 26 6.4
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 8.4
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFET 259
+YV NL S I +FS YGN++++W+ +P A V +E+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYES 44
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEF 253
VYVGNL ++ +I +FSK G IR + + + P GF FVE+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 113 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW 214
D S +YVGN+ + S EI K FSKYG + +++
Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.7 bits (76), Expect = 0.014
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFETPVML 271
VYVGN+ + + E++ F+ G++ V + +P GFA++EF P ++
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLV 109
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 33.9 bits (74), Expect = 0.024
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Frame = +2
Query: 122 CKVYVGNLGTN--ASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFETP 262
C ++V NL N + ++E++FSK+G I++ +A P G+ FV F P
Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----------ARNPPGFAFVEFE 256
+YVGNL + ++ ++F +GN + +++P FAF+ FE
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFE 74
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.9 bits (74), Expect = 0.024
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 113 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFET 259
+L ++V + + + E+++IFSK+G + +V + R P GF F+ F T
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.1 bits (72), Expect = 0.042
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
S V++GNL ++ + EIE+ F K+G I ++ + + AFV F
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHF 341
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 32.3 bits (70), Expect = 0.073
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +2
Query: 107 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFE 256
EWD + +++VGNLG + + + + FS+Y ++ V R+ GF FV F+
Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFK 78
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.3 bits (70), Expect = 0.073
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +2
Query: 113 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR--NPPG----FAFVEFET 259
+L ++YVG L ++ ++E FS++G++ N+ + P G FA++ F T
Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRT 56
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.9 bits (69), Expect = 0.097
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFETPVMLK 274
+C V+VG L N + + F +YG I V + G+ +V+FETP K
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF----AFVEFETPVMLKT 277
+VYVGNL +E+++ + GN+ N + P G A +E+ T +T
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEART 121
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFE 256
+YVGNL S + +F+ G++ +A P GF V+FE
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFE 328
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 31.1 bits (67), Expect = 0.17
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = -2
Query: 576 HMYTLKTISLSHCSSKICTTSQYWFCCQND-CV-GRVIVNGGEKESDGELKATVVETLTG 403
H+ ++ L C +IC+T+QY+ + + CV R +N GE +D L T+++
Sbjct: 96 HLKYYLSLYLPSCKFEICSTNQYFSSSKPEACVIARESINAGEDITD--LCGTIIKLSPK 153
Query: 402 RESMIGGG 379
E IG G
Sbjct: 154 EERNIGIG 161
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.1 bits (67), Expect = 0.17
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFETP 262
SC VYVGN+ ++ ++ IF + G +++ + + P G+ F E+ P
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 30.7 bits (66), Expect = 0.22
Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Frame = +2
Query: 95 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 256
S ++++ S +Y+GNL + ++ +I +FS++G ++ + R+ GFAF+++E
Sbjct: 22 SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFE 256
V+VGNL A + + + F G+I V + R+P GFA+++F+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 128 VYVGNLG-TNASKYEIEKIFSKYGNIRNVWVAR--NPPGFAFVEFET 259
++VG L N + Y + +FSKYG + + + P FAF+ F++
Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDS 413
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRR 354
D RDA D V G G+RI VE + G RR
Sbjct: 46 DARDARDIVNDFQGKEFMGSRIVVEPARGERRR 78
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 0.90
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFS-KYGNIRNVWVARNPPGFAFVEFET-PVMLKTL 280
+YVGNL + S+ E++ +FS + G R + + FVEFE P ++ L
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEAL 480
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/48 (22%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEF 253
++++ NL + ++ +++ +F +G + V + NP GFA+++F
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPAC19D5.06c |din1||Dhp1p-interacting protein
Din1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = -2
Query: 528 ICTTSQYWFCCQNDCVGRVIVNGGEKESDGELKATVVETLTGRESMIGGGDYDCVTAVSP 349
I T + W C D + + + E ++V+ G+ +I G+ DC+ P
Sbjct: 152 ISTLPEIWDACSRDQIEQ---RDNQDVVPDEQYCSIVKINIGKSKLILAGEVDCIWDKKP 208
Query: 348 CA 343
C+
Sbjct: 209 CS 210
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Frame = +2
Query: 77 SIKTKMSRYREWDLSCKV-YVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGF 238
+IK K+S + V YVG L + ++ FS++G + + ++RN +
Sbjct: 89 TIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHY 148
Query: 239 AFVEFETPVMLKTLFVDLMEHAAVAPGFVSKCQMVAQGE 355
AF+EFE+ + + + + M H + G + +C+++ + +
Sbjct: 149 AFIEFES-LDVANVVAETM-HNYLLYGKLLQCKVIPEDQ 185
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 510 YWFCCQNDCVGRVIVNGGEKESDGELKA 427
Y CC N + +V GGEK + L+A
Sbjct: 292 YELCCCNKLFLKKLVEGGEKNGEAPLEA 319
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNV 211
+YV N + +I K+FS YGN+ +V
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDV 695
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR---NPPGFAFVEFET 259
++YV N+ ++ ++E F YG + +V + + GF +V T
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTT 805
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFETPVMLKTLFVDL 292
++VGNL + S + FS YG + ++ + + AF+ F++ K + +L
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEEL 642
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 84 KLRCLATENGIFLAKCT---WATWVLMRLNMK*KKYF 185
KL +AT + IF + W+TWVL R +K +F
Sbjct: 5 KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 164 YEIEKIFSKYGNIRNVWVARNPPGFAFVEFETPVMLKTLFVDLMEHAAVAPGFVSKCQ 337
Y+I K F +YG +++V V + AFV F+T + + V GF K Q
Sbjct: 226 YKIRKHFEQYGPLKSV-VCSHRAKCAFVNFKTRSSAEIAAAASPDGNVVIEGFRLKVQ 282
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFE 256
+YVGNL + ++ FSK R + + N P FVEFE
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFE 647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,244
Number of Sequences: 5004
Number of extensions: 53066
Number of successful extensions: 173
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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