Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1001
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 72 4e-13
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 45 6e-05
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 39 0.005
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.005
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 38 0.008
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 38 0.011
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 35 0.059
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 34 0.10
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 34 0.14
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.32
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 31 0.73
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 31 0.96
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 31 1.3
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 31 1.3
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 30 2.2
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20) 29 2.9
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_42029| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038) 28 6.8
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 28 6.8
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 28 9.0
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 28 9.0
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 72.1 bits (169), Expect = 4e-13
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
++ K+YVGNLG NA E+E+ F K+G + VWVARNPPGFAFVE+E
Sbjct: 2 MTTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYE 48
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDR 360
D RDAE++VR LDG C IRVE SN R RDR
Sbjct: 49 DYRDAEEAVRELDGANVCDRTIRVEFSNNRGGRDR 83
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
+VY+GN+G NASK EIE+ F +G +R+VWVARNPPGFAF FE
Sbjct: 3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFE 46
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDAED+VR LDG CG R RVE++ G +R
Sbjct: 47 DRRDAEDAVRELDGRYICGQRARVELAKGPSR 78
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
KVY+G+LG NASK EIE F YG +++VWVARNPPGFAF F+
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFD 76
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDAED+VR LDG CG R+RVE++ G +R
Sbjct: 77 DRRDAEDAVRELDGRYICGQRVRVELAKGPSR 108
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +2
Query: 122 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---PPGFAFVEFETP 262
C+VYVGNL + + ++ IF KYG+I +V + P FAFVEFE P
Sbjct: 261 CRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDP 310
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRR 354
DPRDAED+V+G DG G RIRVE G + R
Sbjct: 309 DPRDAEDAVKGRDGHEFDGYRIRVEFPRGGSGR 341
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +2
Query: 122 CKVYVGNLGTN-ASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFET 259
C++++GNL T+ ++ ++E+IFS++G + + N F FV+FET
Sbjct: 46 CRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN---FGFVQFET 89
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFETPVMLKTLFVDL 292
++V NL +A + EIE++FSK+G ++ V + N P G+ +VE+E T + L
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTL 231
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 77 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFA 241
+++T + R L C+VYVG++ + I F +G I + ++ +P GFA
Sbjct: 87 ALQTAAQKQRALALMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFA 146
Query: 242 FVEFETP 262
FVE++ P
Sbjct: 147 FVEYDLP 153
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 247
L+ VYVGNL + YE++++FS+YG+I V + G+AF+
Sbjct: 613 LNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFI 655
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 95 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFET 259
+RY + + +YVGNL ++ I IF+K + + +P + FVEFET
Sbjct: 360 ARYFPEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFET 417
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 37.9 bits (84), Expect = 0.008
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +2
Query: 59 NFYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---- 226
N Y S+ + +R + D K++VG L +K +++ FSKYG + V + +
Sbjct: 8 NGYIGTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTG 67
Query: 227 -PPGFAFVEFE 256
P GFAFV+F+
Sbjct: 68 RPRGFAFVQFK 78
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
++C+VY+G L ++ ++ + F YG +R++ + N + FVEFE
Sbjct: 1 MNCRVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFE 44
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 35.1 bits (77), Expect = 0.059
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETP 262
K+YV +L N +K +++IFS YG ++ V + + GFA+VE+ P
Sbjct: 1158 KLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDP 1208
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 34.3 bits (75), Expect = 0.10
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +2
Query: 80 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFV 247
I+ +M++ +E D + +Y+ NL N + +E +FSKYG + + + R N G F
Sbjct: 166 IQAQMAKQQEQDPT-NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFA 224
Query: 248 EFETPVMLKTLFVDLMEHAAVAPGFVSK 331
E+ + + D + + PG + +
Sbjct: 225 RMESAEKCEQVIKDF--NKKMLPGCIQE 250
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Frame = +2
Query: 86 TKMSRYREWDLS----CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGF 238
+++ +Y +DL CK Y+GNL ++ +++ FS+Y ++ +V V + P GF
Sbjct: 214 SRLLKYSYFDLKMGEECKCYIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGF 272
Query: 239 AFVEF 253
AFV F
Sbjct: 273 AFVTF 277
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGR 345
D RDAED+V L+G G R+ VE S GR
Sbjct: 731 DHRDAEDAVHDLNGRDLIGERVVVEFSKGR 760
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 33.1 bits (72), Expect = 0.24
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 80 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 202
+ +S+Y+ CKV+VGN+G E++ F +G++
Sbjct: 65 VSKDISKYKVVSNKCKVFVGNIGFKVRARELKDFFGYFGDV 105
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFETP 262
VYV N G + ++++I ++ G I ++ V +P GF FV FETP
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETP 159
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 226
VYVGNL + + ++ K+F +YG + V + R+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRD 44
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFET 259
++V N+ A + +I ++FS YG I+N+ V + G+A VE+ET
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYET 343
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNV 211
V+VGNL K ++K FSKYG + +V
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +2
Query: 107 EWDLSCK--VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG--FAFVEF 253
E+D C ++VGN+ + ++++ F +YG + +V + + P +AFV+F
Sbjct: 242 EFDPGCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQF 294
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNV 211
++VGNL N + +I K F++YG + +V
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESV 35
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
S +VY G L + + ++EK YG +R + + G+ FVEF+
Sbjct: 4 STRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFD 46
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 211
S +V++GNL + ++ ++FSKYG I +
Sbjct: 356 SHQVFIGNLPSGVKDADVNEVFSKYGTILEI 386
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -2
Query: 315 GATAACSIKSTNRVFSITGVSNSTNANPGGFRATHTLRMLPYLENIFSISYLDALVPK 142
G T C I + V++ A GFR + L M YLEN+ + ++ + K
Sbjct: 5 GKTDYCVISKVRPLIRSNTVNSKVTAKSRGFRTSKRLAMRTYLENVDVLMWIHSSAAK 62
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFV 247
K+Y+GNL N+ + EIE+ F ++G + V + R+ GF FV
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFV 54
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 113 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFET 259
D+S +++V ++ E+ F +YG ++ + R+ G+AF+ FE+
Sbjct: 5 DISKRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFES 57
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFET 259
++VGNL ++ + + S YGNI +++ R + G+ FVE+ T
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYAT 163
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = +2
Query: 170 IEKIFSKYGNIRNVWVARNPP-----GFAFVEFET 259
I+++FS+ GN+ VA NP GFAFV++ T
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYAT 256
>SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 590 SNLYTIANNNATCISCL*KHKSK 658
S L+ AN TC+ CL KHKS+
Sbjct: 328 SALFVEANGQGTCVYCLGKHKSE 350
>SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)
Length = 1074
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 590 SNLYTIANNNATCISCL*KHKSK 658
S L+ AN TC+ CL KHKS+
Sbjct: 142 SALFVEANGQGTCVYCLGKHKSE 164
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +2
Query: 107 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
E ++ K++VG L + ++ + + F+++G + +V++ + F FV F
Sbjct: 194 ELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTF 242
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 122 CKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFET 259
C +YV N+G +A++ I +F + G + V W + GF FV T
Sbjct: 275 CTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMAT 325
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +2
Query: 113 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFETPVMLKT 277
D K++VG L + + + F YG + +V V + GF +V F + +
Sbjct: 11 DPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRN 70
Query: 278 LFVDLMEHAA 307
+ D +E+ A
Sbjct: 71 VLKDKVENGA 80
>SB_42029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -2
Query: 495 QNDCVGRVIVNGGEKESD-----GELKATVVETLTGRESMIGGGDYDCV 364
QNDCV +VNG + SD G+ + + G + GG D DCV
Sbjct: 3 QNDCVDHDVVNGDDGNSDYYGGSGDEECGSSDDNGGSDD-CGGNDDDCV 50
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEF 253
++VGNL T S ++ F K+G + +V + R G +AFV+F
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKF 284
>SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)
Length = 406
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 584 VWSNLYTIANNNATCISCL*KHKSKT 661
+W LY + +NN+ SCL KS+T
Sbjct: 263 IWWRLYQLQSNNSQLFSCLQGRKSQT 288
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVE--MSNGRTRRDRSHAVVVPAADHTLAAGQCLHDGR 429
DPRDAE+++R + + G+RI VE S R + D L G+ R
Sbjct: 48 DPRDAEEAMRRENNRKLFGSRIVVEYVRSGERGKPVGGQTRPTVVGDECLVCGKLGIGHR 107
Query: 430 LQFAVALL-LPAVHDHATDAVVLT 498
V + +P V+DH V+T
Sbjct: 108 PVRPVEIQEIPEVNDHFQSRWVVT 131
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
+S +VY+G L + +++K F YG + + G+ FVEF+
Sbjct: 1 MSNRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILK-DGYGFVEFD 46
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +2
Query: 74 FSIKTKM-SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPG 235
F I+ + S + D V++GNL + + + ++F+ GN+ +V + R+ G
Sbjct: 39 FHIRVDLASNDKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKG 98
Query: 236 FAFVEFET 259
F +V FE+
Sbjct: 99 FGYVLFES 106
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYG---NIRNVW--VARNPPGFAFVEFE 256
V+VGN+ AS+ ++++IFS+ G + R V+ P G+ F E++
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYK 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,901
Number of Sequences: 59808
Number of extensions: 403525
Number of successful extensions: 1186
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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