Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1001
         (733 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ103706-1|AAZ43087.1|  344|Anopheles gambiae pk-1 receptor prot...    27   0.60 
AF469165-1|AAL68692.1|  226|Anopheles gambiae amylase protein.         24   5.6  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   5.6  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    23   7.4  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   9.7  

>DQ103706-1|AAZ43087.1|  344|Anopheles gambiae pk-1 receptor
           protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 0.60
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 308 QQRVPSSPRTESSASRGS-RILQMQIRADFELPIRYVCYRI*KIFFLFHI*TH*YPSCPR 132
           Q+R   SPR   + S+GS R+L+M +       I +  +   ++ +++ + T+  PS P 
Sbjct: 246 QRRTQPSPRQSFANSQGSRRVLKMLVAVVVAFFICWAPFHAQRLVYIYGVNTNHQPSDPL 305

Query: 131 TL 126
            L
Sbjct: 306 IL 307


>AF469165-1|AAL68692.1|  226|Anopheles gambiae amylase protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 292 DGTRCCGTRIRVEMSNGRTRR--DRSHAVVV 378
           DGT C GTR+ V+  +GR      RS +VV+
Sbjct: 190 DGTMCTGTRVLVD-GDGRVSLTVPRSSSVVL 219


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 305  QRVPSSPRTESSASRGSRILQMQIR 231
            +R+P SPRT     R    +Q+Q R
Sbjct: 1114 RRLPPSPRTTEMRRRRRNYMQLQYR 1138


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 433 QFAVALLLPAVHDHATDAVVLTAKPVLRSCADFRRTM 543
           ++  A L PA H+   +AV   A+  LR+C   + T+
Sbjct: 674 KYDCACLPPATHELTPEAVHQWAQYDLRTCKTLKGTL 710


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 343 RTRRDRSHAVVVPAADHTLAAGQCLHDGRLQF 438
           R+ R+ +H++V P   + L+  +  H G+  F
Sbjct: 665 RSARNTNHSIVPPPNANNLSYAETNHKGQRDF 696


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,339
Number of Sequences: 2352
Number of extensions: 13672
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)