Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1001
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 67 1e-11
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 67 1e-11
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 67 1e-11
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 47 2e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 47 2e-05
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 40 0.002
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 40 0.002
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 40 0.002
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 40 0.002
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 40 0.002
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 38 0.010
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 37 0.013
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 37 0.013
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 36 0.039
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 36 0.039
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 36 0.039
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 36 0.039
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 36 0.039
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 36 0.039
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 35 0.052
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 35 0.068
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 34 0.090
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 34 0.090
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.21
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 32 0.36
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 32 0.36
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 32 0.36
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 32 0.48
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 31 0.64
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 31 0.64
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 31 0.84
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 31 0.84
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.84
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 31 1.1
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 31 1.1
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 30 1.5
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 30 1.9
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 30 1.9
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 29 3.4
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 3.4
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 3.4
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 29 3.4
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 29 3.4
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 29 3.4
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 29 3.4
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 3.4
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 29 3.4
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 4.5
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 4.5
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 4.5
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 28 5.9
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 28 5.9
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 28 5.9
AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical ... 28 7.8
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE++
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYD 47
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDAED+VR LDG+R CG R RVE+S G+ R
Sbjct: 48 DVRDAEDAVRALDGSRICGVRARVELSTGQRR 79
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE++
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYD 47
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDAED+VR LDG+R CG R RVE+S G+ R
Sbjct: 48 DVRDAEDAVRALDGSRICGVRARVELSTGQRR 79
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE++
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYD 47
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDAED+VR LDG+R CG R RVE+S G+ R
Sbjct: 48 DVRDAEDAVRALDGSRICGVRARVELSTGQRR 79
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFE 256
KVYVGNL + + E+E IF KYG I+ V + + P FAFVEFE
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFE 54
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/46 (43%), Positives = 23/46 (50%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRSHAVVVPAADH 393
D RDAED+VR DG G RIRVE + G R + DH
Sbjct: 55 DHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDH 100
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFE 256
KVYVGNL + + E+E IF KYG I+ V + + P FAFVEFE
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFE 54
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/46 (45%), Positives = 24/46 (52%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRSHAVVVPAADH 393
D RDAED+VR DG G RIRVE + G R S + DH
Sbjct: 55 DHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPSGRPLQDGGDH 100
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 11/58 (18%)
Frame = +2
Query: 125 KVYVGNLGTNASKYE-----------IEKIFSKYGNIRNVWVARNPPGFAFVEFETPV 265
+VYVGN+ +A++ E IE +FS G I+++W+A+ PPGFAFV F+ V
Sbjct: 18 QVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTV 75
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVEF+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFD 44
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGR 345
D RDAED+V L+G G R+ ++ S R
Sbjct: 45 DKRDAEDAVHDLNGKELGGERVILDYSKPR 74
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVEF+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFD 44
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGR 345
D RDAED+V L+G G R+ ++ S R
Sbjct: 45 DKRDAEDAVHDLNGKELGGERVILDYSKPR 74
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVEF+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFD 44
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGR 345
D RDAED+V L+G G R+ ++ S R
Sbjct: 45 DKRDAEDAVHDLNGKELGGERVILDYSKPR 74
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFETPVMLKT 277
VYV N G + +K +EK+F+K+GNI + + V GF FV F P +T
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 267
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFETP 262
+YV NL ++K F YGNI + V + GF FV FE P
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKP 367
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFETPVMLKT 277
VYV N G + +K +EK+F+K+GNI + + V GF FV F P +T
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 207
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFETP 262
+YV NL ++K F YGNI + V + GF FV FE P
Sbjct: 259 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKP 307
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFETPVMLKT 277
VYV N G + +K +EK+F+K+GNI + + V GF FV F P +T
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 204
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFETP 262
+YV NL ++K F YGNI + V + GF FV FE P
Sbjct: 256 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKP 304
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFETPVMLKT 277
VYV N G + +K +EK+F+K+GNI + + V GF FV F P +T
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 267
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFETP 262
+YV NL ++K F YGNI + V + GF FV FE P
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKP 367
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFET 259
SC +YVGNL + ++ ++F + G++R V + + P GF FVE+ T
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYT 87
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +2
Query: 122 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFET 259
C+++VGNL + E++++FS +G+I +++ GFAF+ +T
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDT 159
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +2
Query: 122 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFET 259
C+++VGNL + E++++FS +G+I +++ GFAF+ +T
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDT 159
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 253
V+VGN+ + S+ I IFSK GN+ ++ + + P G+ F+EF
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEF 66
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
+VY+G L AS ++E F YG + +V + +N GF FV+F+
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQ 43
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVE 330
D RDA+D+V L+G CG R+ +E
Sbjct: 44 DQRDADDAVHDLNGKELCGERVILE 68
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 35.5 bits (78), Expect = 0.039
Identities = 14/44 (31%), Positives = 29/44 (65%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFET 259
++ NL +A+ +E +F+++ ++++ + N PG AFVEF+T
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDT 177
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
++Y+G + NA + ++E+ YG I N+ + GFAFV+FE
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFE 43
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIR--VEMSNGRTRRDRSH 366
D RDAED+ LDG G+ +R VEM+ G+ R + H
Sbjct: 44 DSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRH 82
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
++Y+G + NA + ++E+ YG I N+ + GFAFV+FE
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFE 43
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIR--VEMSNGRTRRDRSH 366
D RDAED+ LDG G+ +R VEM+ G+ R + H
Sbjct: 44 DSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRH 82
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
++Y+G + NA + ++E+ YG I N+ + GFAFV+FE
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFE 43
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIR--VEMSNGRTRRDRSH 366
D RDAED+ LDG G+ +R VEM+ G+ R + H
Sbjct: 44 DSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRH 82
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 253
VYVGN+ ++ EI F+ G++ NV + + P GFAFVEF
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEF 54
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEF 253
VYVGN ++ ++ FS+ GN+ NV + P GFAFVEF
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEF 52
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 253
VYVGN ++ E+ FS G I NV + + P GFAF+EF
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEF 53
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 34.7 bits (76), Expect = 0.068
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFET 259
KV+V N+ A+ E++ +FSK+G + +V + P G AFV+F+T
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDT 732
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 34.7 bits (76), Expect = 0.068
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +2
Query: 68 PPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPP 232
PP S S + S +Y+ L N + + ++ SKYGNI + N
Sbjct: 89 PPTSQHRASSNFNTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCK 148
Query: 233 GFAFVEFETP 262
G+ FV+FE+P
Sbjct: 149 GYGFVDFESP 158
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 34.7 bits (76), Expect = 0.068
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +2
Query: 89 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 253
++ R R + +C+V NL ++ E+ +F K G + +++AR+ P GFAFV F
Sbjct: 167 QIDRNRSDENTCRVT--NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
Query: 254 ET 259
E+
Sbjct: 225 ES 226
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 34.3 bits (75), Expect = 0.090
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEF 253
VYVGN+ A+ EIE+ F G++ V + + +P GFA+VEF
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEF 126
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 34.3 bits (75), Expect = 0.090
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +2
Query: 122 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 247
C+++VGNL + E++++FS +G+I +++ GFAF+
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFL 155
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
VYVGN+ + ++ +FS YG+I V + + +AFV +E
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKT-QRYAFVRYE 280
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEF 253
K++VG L +N + + + +S++G I ++ V R+P GF FV F
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEF 253
K++VG L +N + + + +S++G I ++ V R+P GF FV F
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEF 253
K++VG L +N + + + +S++G I ++ V R+P GF FV F
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEK----IFSKYGNIRNVWVARNPPGFAFVEFET 259
+Y+GNLG + ++ EK F +YG+IR + V G AF+EF T
Sbjct: 237 LYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVL-TEKGCAFIEFTT 283
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +2
Query: 89 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFV 247
K S ++ + S +Y+G L S+ ++ +FS+YG + N+ + R+ GFAF+
Sbjct: 27 KKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFL 84
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 211
+V + NL N K +E+IFS YG I+NV
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNV 162
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 265 DAEDSVRGLDGTRCCGTRIRVEMSNGR 345
DAE S++ +DG + G + VEM+ GR
Sbjct: 187 DAEKSIKHMDGGQIDGMAVHVEMTIGR 213
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 65 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP--- 232
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 233 -GFAFVEF 253
+A+VEF
Sbjct: 204 CAYAYVEF 211
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 65 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP--- 232
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 233 -GFAFVEF 253
+A+VEF
Sbjct: 204 CAYAYVEF 211
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPGFAFVEFETPVMLKTLF 283
++VG + S+ ++ + F YG I+ + + A P G+AF+E+ + T +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAY 161
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFETP 262
S +Y+ L N + + ++ SKYGNI + N G+ FV+FE+P
Sbjct: 80 STNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESP 132
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEF 253
V+V N G + + ++ +FSK+G I + V + P GF FV F
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAF 285
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEF 253
V+V N G + + ++ +FSK+G I + V + P GF FV F
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAF 285
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFET 259
V+V N+ A++ ++ FS+YG I+N+ + + G+A VE+ET
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYET 105
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFET 259
++ N+ +I+ IFS++ +R V N FAF+E+E+
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYES 188
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 256
VYVGN+ ++ EIE+ F+ G + V + ++ FAFVEF+
Sbjct: 48 VYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQ 95
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFET 259
K++VG + + ++ F++YG + V + GFAFVEF T
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT 79
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFET 259
K++VG + + ++ F++YG + V + GFAFVEF T
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT 79
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFETP 262
K+++G L + + F ++G + V R+P GF F+ F P
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDP 96
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 235
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 235
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 235
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 235
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 235
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 235
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 235
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFETP 262
K+++G L + + F ++G + V R+P GF F+ F P
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDP 96
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEF 253
+VYV ++ + S+ +++ +F +G I +AR P GF ++EF
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEF 253
+VYV ++ + S+ +++ +F +G I +AR P GF ++EF
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEF 253
+VYV ++ + S+ +++ +F +G I +AR P GF ++EF
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 62 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPP 232
F P S+K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 32 FTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK 90
Query: 233 GFAFVEFET 259
GF FV ++
Sbjct: 91 GFGFVTLDS 99
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 226
S KV+VG L + + +I FS+YG ++ W +++
Sbjct: 87 SRKVFVGGLPSCVKESDILNFFSRYGRLQVDWPSKH 122
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 62 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPP 232
F P S+K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 32 FTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK 90
Query: 233 GFAFVEFET 259
GF FV ++
Sbjct: 91 GFGFVTLDS 99
>AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical
protein F09G2.8 protein.
Length = 516
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 480 GRVIVNGGEKESDGELKATVVETLTGRESM 391
GR + EKE +GE K T +ET GR M
Sbjct: 4 GRTYLTPHEKEENGERKNTRMETHDGRADM 33
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,192
Number of Sequences: 27780
Number of extensions: 306162
Number of successful extensions: 916
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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