Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1001
(733 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 60 1e-09
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 60 2e-09
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 60 2e-09
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 58 5e-09
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 48 5e-06
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 46 3e-05
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 46 3e-05
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 46 3e-05
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 46 3e-05
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 46 3e-05
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 44 1e-04
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 44 1e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 43 2e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 41 0.001
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 41 0.001
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 38 0.007
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 38 0.007
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 38 0.009
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 36 0.021
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 36 0.021
At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.021
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 36 0.021
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 36 0.021
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 36 0.028
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 36 0.028
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.028
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 36 0.037
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.037
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.064
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.064
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 35 0.064
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 35 0.064
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 34 0.085
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 34 0.085
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.085
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.085
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 34 0.085
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 34 0.11
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 33 0.15
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 33 0.20
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 33 0.20
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 33 0.20
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 32 0.34
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 32 0.34
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.34
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 32 0.45
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 32 0.45
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.45
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 32 0.45
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 32 0.45
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 32 0.45
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 32 0.45
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 32 0.45
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 31 0.60
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 0.60
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.60
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 31 0.60
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 31 0.60
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.79
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 0.79
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 0.79
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 31 1.0
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 31 1.0
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 31 1.0
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 1.0
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 30 1.4
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 30 1.4
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 30 1.4
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 30 1.4
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 30 1.4
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.4
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.4
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.4
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 30 1.8
At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-contain... 30 1.8
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 30 1.8
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 30 1.8
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 2.4
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 29 2.4
At1g78410.1 68414.m09137 VQ motif-containing protein contains PF... 29 2.4
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 3.2
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 3.2
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 3.2
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 3.2
At5g16300.1 68418.m01905 expressed protein 29 3.2
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 3.2
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 29 3.2
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 29 3.2
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 4.2
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 4.2
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 29 4.2
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 28 5.6
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 28 5.6
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 28 7.3
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 28 7.3
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 28 7.3
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 28 7.3
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 28 7.3
At5g16300.2 68418.m01906 expressed protein 27 9.7
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 9.7
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 27 9.7
At1g21000.1 68414.m02628 zinc-binding family protein similar to ... 27 9.7
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 27 9.7
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 27 9.7
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/46 (52%), Positives = 34/46 (73%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFETP 262
+VYVGNL ++ E+E F +G +R+VWVAR PPG+AF++FE P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDP 48
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRR 354
DPRDA D++R LDG RVE S+ R R
Sbjct: 47 DPRDARDAIRALDGK----NGWRVEQSHNRGER 75
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFD 46
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFD 46
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
+VYVGNL ++ E+E F +G IR+VWVAR PPG+AF++FE
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFE 46
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFETP 262
+YVGNL + K E+E +F KYG I ++ + PPG+AFVEFE P
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDP 55
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
DPRDA+D++ G DG G R+RVE+++G R
Sbjct: 54 DPRDADDAIYGRDGYDFDGCRLRVEIAHGGRR 85
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFE 256
+YVGNL + + E+E +FSKYG + + + PPG+AFVEFE
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFE 53
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDA+D++ G DG G +RVE+++G R
Sbjct: 54 DARDADDAIYGRDGYDFDGHHLRVELAHGGRR 85
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFE 256
+YVGNL + + E+E +FSKYG + + + PPG+AFVEFE
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFE 53
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDA+D++ G DG G +RVE+++G R
Sbjct: 54 DARDADDAIYGRDGYDFDGHHLRVELAHGGRR 85
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFE 256
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFD 53
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDAED++ G DG G R+RVE+++G R
Sbjct: 54 DARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFE 256
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFD 53
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDAED++ G DG G R+RVE+++G R
Sbjct: 54 DARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFE 256
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFD 53
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTR 351
D RDAED++ G DG G R+RVE+++G R
Sbjct: 54 DARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +2
Query: 92 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFETP 262
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF P
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDP 54
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRSHAVVVPAADHTLAAGQCLHDG 426
DPRDA+D+ LDG G+RI VE S G R R + P +G+C + G
Sbjct: 53 DPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPP----GSGRCFNCG 105
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFE 256
S +YVGNL + ++EIE IF KYG I ++ V PP + FVEFE
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFE 53
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 262 RDAEDSVRGLDGTRCCGTRIRVEMSNG 342
RDAED+++G DG G R+RVE+++G
Sbjct: 56 RDAEDAIKGRDGYNLDGCRLRVELAHG 82
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +2
Query: 92 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFETP 262
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF P
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDP 54
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/57 (40%), Positives = 28/57 (49%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRSHAVVVPAADHTLAAGQCLHDG 426
DPRDA+D+ LDG G+RI VE S G R R P AG+C + G
Sbjct: 53 DPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPP----GAGRCFNCG 105
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFET 259
L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++ET
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYET 155
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFET 259
L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++ET
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYET 155
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Frame = +2
Query: 113 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFET 259
D C ++VG L + ++ + ++ SKYG I+N+ + R+ G+ FVE+ET
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEF 253
++YVGNL N S+ ++ K+F +G++ V V R+ GF FV+F
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQF 332
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +2
Query: 161 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
K ++++ SK+G + +++V +N GF ++ FE
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFE 519
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 113 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFETPVMLKT 277
D KVYVGNL +K +E +FS+ G + + V+R P GF FV F + ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 278 LFVDL 292
V L
Sbjct: 234 AIVAL 238
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/43 (34%), Positives = 30/43 (69%)
Frame = +2
Query: 98 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 226
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/43 (34%), Positives = 30/43 (69%)
Frame = +2
Query: 98 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 226
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFETPVM 268
K+YV L +K E+ ++FS+YG I ++++A + G+AFV+F M
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEM 259
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 211
K+YV + A++Y+I ++F KYGN+ +
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/57 (40%), Positives = 28/57 (49%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRSHAVVVPAADHTLAAGQCLHDG 426
DPRDA+D+ LDG G+RI VE S G R R P AG+C + G
Sbjct: 12 DPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPP----GAGRCFNCG 64
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/57 (40%), Positives = 28/57 (49%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRSHAVVVPAADHTLAAGQCLHDG 426
DPRDA+D+ LDG G+RI VE S G R R P AG+C + G
Sbjct: 23 DPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPP----GAGRCFNCG 75
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETP 262
+Y+G + + EIE FS++G ++ V VARN F F++FE P
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDP 111
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
VYVGN + ++E++FSK+G ++ V + G+AFV FE
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFE 43
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.9 bits (79), Expect = 0.028
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Frame = +2
Query: 89 KMSRYREWDLSC----KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAF 244
++ R D SC K++VG L N S+ E++ +FS+YG I+++ + R G F
Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLF 153
Query: 245 VEFET 259
+++E+
Sbjct: 154 LKYES 158
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRCCGTRIRVEMSNGRTRRDRSHAVVVPAADHTLAAGQCLHDG 426
DPRDA+D+ LDG G+RI VE S G R R + P +G+C + G
Sbjct: 12 DPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPP----GSGRCFNCG 64
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.5 bits (78), Expect = 0.037
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFET 259
L K++VG L N S+ E++ +FS+YG I+++ + R G F+++E+
Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYES 149
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.064
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEF 253
K+YVGNL N S+ ++ +IF +G + V + +P GF F++F
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 185 SKYGNIRNVWVARNPPGFAFVEFET 259
SKYG + +++V +N GF ++ F++
Sbjct: 466 SKYGPVNHIYVDKNSAGFVYLRFQS 490
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 161 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFET 259
+++IEK F YG + NV + RN F+FV+FET
Sbjct: 107 EHDIEKHFEPYGKVTNVRIRRN---FSFVQFET 136
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
V+VGN + ++E++F KYG + V + G+AFV FE
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFE 43
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFETPVMLKTLFVD 289
+++VG+L AS+ +++K+F G + V + +NP G AF+ F T K +
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 290 L 292
L
Sbjct: 275 L 275
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 34.7 bits (76), Expect = 0.064
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +2
Query: 62 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-- 235
F PF K + + VYV NL + E++ F +YG+I + V R+ G
Sbjct: 205 FVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKS 264
Query: 236 --FAFVEFETP 262
F FV FE P
Sbjct: 265 RCFGFVNFENP 275
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 235
+YV NL + ++ ++F+++G I + V R+P G
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG 365
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFETP 262
S +YV NL + S ++++IFS +G + + V R+P G FV F TP
Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 182
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFE 256
VYV NL + + +++ F +YG I + V ++ GF FV FE
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 77
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFETP 262
VYV NL + E++K F KYG+I + V ++ G F FV F +P
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP 275
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +2
Query: 89 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 256
++SR+ + S +Y+ NL + + +++++FS+YGN+ + V N GF FV +
Sbjct: 318 RISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYS 376
Query: 257 TP 262
P
Sbjct: 377 NP 378
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.085
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 98 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEF 253
R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.085
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 98 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEF 253
R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 34.3 bits (75), Expect = 0.085
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 89 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 256
+++R+ E +Y+ NL + +++++FS+YGN+ + V NP GF FV +
Sbjct: 322 RINRF-EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380
Query: 257 TP 262
P
Sbjct: 381 NP 382
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFE 256
VYV NL + E+ K F K+G I + V R+ G F FV FE
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFE 277
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFET 259
+C VY+GN+ S + I + G + ++ + R+ P GFAF E+ET
Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYET 57
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 134 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
VGN+ +N YE++ +F ++G+I+ + A GF V +
Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSY 260
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVMLKTLFVD 289
K+++G L + + K F KYG I + + R+ P GF F+ F P ++ + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVMLKTL 280
K++VG + + ++ E++ F+KYGN+ V R+ GF FV F++ ++ L
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVMLKTLFVD 289
K+++G L + + K F KYG I + + R+ P GF F+ F P ++ + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVMLKTL 280
K++VG + + ++ E++ F+KYGN+ V R+ GF FV F++ ++ L
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 CK-VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
CK ++VG +G N SK ++E+ FSK+G I + R AF+++
Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDY 292
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
S ++VG+L ++ ++ ++F +YG+I + V + GFAF+ +
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYY 60
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPGFAFVEFE 256
+YV NL N + E+ IF KYG IR + + + G AFV +E
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYE 65
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Frame = +2
Query: 134 VGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 253
V N+ + E+ + F ++G +R+V++ R+ P GFAFVEF
Sbjct: 51 VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEF 253
K++VG + S+ +++ FS+YG + VA+ P GF FV F
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
V+ GN +A + ++E++F KYG + V + GFAFV E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYME 43
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRC--CGTRIRVEMS-NGRTRRDRS 363
D RDAED++R LD G R+RVE + N R RS
Sbjct: 44 DERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRS 82
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
V+ GN +A + ++E++F KYG + V + GFAFV E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYME 43
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 256 DPRDAEDSVRGLDGTRC--CGTRIRVEMS-NGRTRRDRS 363
D RDAED++R LD G R+RVE + N R RS
Sbjct: 44 DERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRS 82
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEF 253
S +YVGN+ + E+++ F G + V + + P GFA+VEF
Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF 150
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 104 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVE 250
R +D + ++YVGNL + +E++FS++G + + V + GF FV+
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQ 254
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
++V NL ++ S E+ IFS YG IR V + ++EF
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEF 338
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 122 CKVYVGNLGTNA-SKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 250
C V V NL ++ + ++ +FS YGNI + + RN P A V+
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQ 288
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
++V N+ +N E+ +F +YG+IR ++ GF + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISY 211
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
++V N+ +N E+ +F +YG+IR ++ GF + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISY 211
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
V+ GN +A + ++E++F KYG + V + GFAFV E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYME 43
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 152 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
N ++EK F YG I NV + RN FAF+++E
Sbjct: 108 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYE 139
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 116 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFET 259
++ +VYVGNL + + + FS YGN+ + V R+ GF FV + +
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +2
Query: 80 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAF 244
I + S + ++ S VYVG + + ++ ++ +FS+YG I +V + R+ GFAF
Sbjct: 22 ISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAF 81
Query: 245 VEFE 256
+ +E
Sbjct: 82 LAYE 85
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFET 259
K+YV L ++ + F ++GN+ ++ VA P GFAF+ +ET
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYET 127
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFE 256
VYV NL + S E+ K+F ++G + + R+ GF FV FE
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFE 272
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFETP 262
+YV NL + + ++ + F+ +G I + V R+P G + FV F TP
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTP 377
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 113 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 253
D + K++VG L + E K F KYG I + + ++ P GF FV +
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY 90
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFETPV 265
+++ NL + ++ +F +Y + + + PG AFVE+E V
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDV 201
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFETPV 265
+++ NL + ++ +F +Y + + + PG AFVE+E V
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDV 202
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 152 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 256
N ++EK F YG I NV + RN FAF+++E
Sbjct: 67 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYE 98
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVML 271
K++VG + + ++ + F+ YG + V R+ P GF FV F P +L
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVAR---NPPGFAFVEF 253
S K++VG + + ++ + + FSKYG + + V R GFAFV F
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFETPV 265
VYVGNL S+ ++ + F G I V V R+ GF FV + T V
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHV 308
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEF 253
S VY+GN+ ++ ++ ++FS+ G I+ + + + P GF FV F
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLF 82
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEF 253
VYVGN+ + E++ F G + V + + P GFA+VEF
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEF 253
VYVGN+ + E++ F G + V + + P GFA+VEF
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVMLKTLFVD 289
K+++G + + + +++ F KYG++ + R+ GF F+ F P + + + +D
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 134 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
V NL + S ++E IF YG I+ + N FVEF
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEF 265
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 309 TAACSIKSTNRVFSITGVSNSTNANPGGFRATHTLRMLPYLENIFSISYLD 157
+A ++K+ NR ++ PGG R L+M P LE S SYL+
Sbjct: 270 SADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPELEQDDSYSYLN 320
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFETP 262
S VYV NL + + +FS+YG + +V V R+ GF FV F P
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNP 252
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +2
Query: 113 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVEFET 259
D +++ NL + +K E+++ F+ +G + ++ V + P G AFV+F+T
Sbjct: 558 DFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN--PPGFAFVEFET 259
+YV NL + ++E++FS++G I + V V N G FVEF T
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFST 272
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFETPV 265
+++ NL + ++ +F +Y + + + PG AFVE+E V
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDV 205
>At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-containing
protein / lipid-binding START domain-containing protein
contains Pfam profiles PF01852: START domain, PF00169:
PH domain
Length = 737
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -1
Query: 664 KSFR-LMFSKTANAG-CIIISNSIQITPHAFSHVHA*NYKSFTLFF*NLHN 518
KSF+ + SKT NAG +I + I++T + +VH + FTL+ + HN
Sbjct: 43 KSFKSISDSKTKNAGRSAVIDSCIRVTDNGRENVHRKAFFIFTLYNTSNHN 93
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFET 259
VYVGNL ++ ++ ++F G I V V R+ GF FV + T
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNT 319
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFET 259
VYVGNL ++ ++ ++F G I V V R+ GF FV + T
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNT 315
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEF 253
+++VG LG + + ++ KIFS G + V +V FA+++F
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 253
++V NL + ++ +F +Y + V + PG AFVEF
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEF 220
>At1g78410.1 68414.m09137 VQ motif-containing protein contains
PF05678: VQ motif
Length = 108
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 474 VIVNGGEKESDGELKATVVETLTGRESMIGGGDYDCVTA 358
V +N E+D TVV+ LTG+ +++ G +D +A
Sbjct: 15 VFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSA 53
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 107 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVML 271
E DL K+++G + + + + FS YG++ + R+ GF F+ F P +
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 272 KTLFVD 289
+ + +D
Sbjct: 61 ERVIMD 66
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 107 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVML 271
E DL K+++G + + + + FS YG++ + R+ GF F+ F P +
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 272 KTLFVD 289
+ + +D
Sbjct: 61 ERVIMD 66
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 107 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVML 271
E DL K+++G + + + + FS YG++ + R+ GF F+ F P +
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 272 KTLFVD 289
+ + +D
Sbjct: 61 ERVIMD 66
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 229
V+VGNL K I K FSK+G + +V + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g16300.1 68418.m01905 expressed protein
Length = 1068
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 357 VSPCATI*HFDTNPGATAACSIKSTNRVFSITGVSNSTNA 238
+ PC+T+ F P + A S +STN+V SI SN +A
Sbjct: 947 IMPCSTVPRFKYLPISAPALSSRSTNKV-SIPVTSNDASA 985
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFET 259
+Y+ NL S+ + +FS +G + +A++ GFAF+EFE+
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFES 66
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 104 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 202
R ++ + +VYVGNL + +E++FS++G +
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFET 259
VYVGNL ++ ++ + F G I V V R+ GF FV + T
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-KGFGFVRYNT 311
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFET 259
K++VGNL N ++ ++F GN+ V V GF FV T
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFET 259
K++VGNL N ++ ++F GN+ V V GF FV T
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
profile:PF00076 rrm:RNA recognition motif
Length = 296
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFE 256
+++ NLG N ++ E++++ S+Y + + AR AF +FE
Sbjct: 225 LFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFE 268
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFE 256
VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFE
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFE 307
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = +2
Query: 128 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFE 256
VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFE
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFE 366
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETP 262
SCK+++G + S+ + F +G + + ++ GF FV F P
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADP 57
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +2
Query: 119 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETP 262
SCK+++G + S+ + F +G + + ++ GF FV F P
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADP 57
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 652 LMFSKTANAGCIIISNSIQITPHAFSHVHA*NYKSFTLFF*NLHNFSILVLL 497
++FS + + I H+++H H Y +FT F LH+ I LL
Sbjct: 1 MLFSTVLSHRTLYILTCPNTLIHSYTHPHIHAYLAFTGFLTQLHHLEISCLL 52
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFET 259
+VYVGNL +E +FS+ G + V + GF FV +++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDS 254
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFETPVMLKTLFVD 289
KV+VG L + + F +YG+I V + G+ FV F P + VD
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 290 LMEHAAVAPGFVSKCQMVAQGET 358
+ G + C + + G +
Sbjct: 85 ---PTPIIDGRRANCNLASLGRS 104
>At5g16300.2 68418.m01906 expressed protein
Length = 1034
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 357 VSPCATI*HFDTNPGATAACSIKSTNRVFSITGVSNSTN 241
+ PC+T+ F P + A S +STN+V SI SN +
Sbjct: 947 IMPCSTVPRFKYLPISAPALSSRSTNKV-SIPVTSNDAS 984
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFETPV 265
+VY+GNL + ++ +I K+FS I +V + +N G+A V+F+ V
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSV 313
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 27.5 bits (58), Expect = 9.7
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Frame = +2
Query: 95 SRYREWDLSCK--VYVGNLGTNASKYEIEKIFS-KYGNIRNVWVA-----RNPPGFAFVE 250
S+Y+E D+S ++V N+ A K I FS K G ++NV V R+P G AFV
Sbjct: 434 SQYQE-DVSESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVT 492
Query: 251 FET 259
F T
Sbjct: 493 FAT 495
>At1g21000.1 68414.m02628 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 246
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 593 NLYTI-ANNNATCISCL*KHKSKTFISV*ITHFINFKELKYIFYFIDI 733
NL+ + NA C CL KHK + + + + N + I FIDI
Sbjct: 43 NLFCLDCAGNAFCSYCLVKHKDHRVVQIRRSSYHNVVRVNEIQKFIDI 90
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +2
Query: 125 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFETPVMLKTLFVD 289
K++VG L + E++ F YG+I + GF FV F+T + LF D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 290 LMEH 301
H
Sbjct: 218 GKVH 221
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 122 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 229
C++YV N+ + ++ +F +G + +V V+RNP
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNP 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,102,812
Number of Sequences: 28952
Number of extensions: 273726
Number of successful extensions: 953
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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