Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0994
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 38 9e-04
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 37 0.002
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 35 0.011
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.033
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.044
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 33 0.044
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 30 0.31
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 0.41
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 1.6
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 27 2.9
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 2.9
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 2.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.0
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 5.0
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 25 8.8
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 38.3 bits (85), Expect = 9e-04
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 388 KKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
++ L+ ++P + + C C+E I P +CGHIFC C
Sbjct: 237 ERDLEDKNKLPFIPEGNRKCSLCMEFIHCPAATECGHIFCWSC 279
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 379 LDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+D KE +E +E+ C C E I CVL C H CH C
Sbjct: 67 VDASKEEQDE--DEQICFICAEGITYSCVLPCNHRMCHVC 104
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -3
Query: 409 WQSVYXAKKHLDQLKE--IPNEV--DNEKTCVACLEEILQPCVLQCGHIFCHQC 260
W SV K +L+E + NE D C+ C ++ P CGH FC QC
Sbjct: 224 WDSVQEKYKKGAKLEEGMVKNEKKEDIPFVCLICKKDYRSPIATTCGHHFCEQC 277
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 33.1 bits (72), Expect = 0.033
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 382 HLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
H++ L + V E C C + P V CGH FC C
Sbjct: 154 HMEDL--LQENVSRELECQICFGMLYDPVVSPCGHTFCGPC 192
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 32.7 bits (71), Expect = 0.044
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 370 LKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
L E ++ C C E + +P CGH +C++C
Sbjct: 72 LLETFQKIKKTLECPICTEALQRPFTTHCGHTYCYEC 108
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 32.7 bits (71), Expect = 0.044
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 388 KKHLDQLKE-IPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+++L L E I + ++ + C+ C + I Q + CGH++C C
Sbjct: 1072 RRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFC 1115
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.31
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 349 VDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+D+ C+ C E P + C H FC C
Sbjct: 23 LDSSLRCLICHEYFRAPLITSCSHTFCSFC 52
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.5 bits (63), Expect = 0.41
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
CV CL+ CGHIFC+ C
Sbjct: 206 CVICLDSPENLSCTPCGHIFCNFC 229
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C C +P L C H+FC C
Sbjct: 360 CAICSNVAYKPVRLGCSHVFCLHC 383
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -3
Query: 412 LWQSVYXAKKHLDQLKEIPNEVD-NEKTCVACLEEILQPCVLQCGHIFCHQCC*AH*TVV 236
+W A LD + NE + N C AC E ++ V CG+ CC H V
Sbjct: 158 IWTFTNHALAELDAY--LHNEYESNLYECNACREIVIAGYVCDCGYCLHVYCC-KHLAHV 214
Query: 235 HC 230
+C
Sbjct: 215 NC 216
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -3
Query: 328 VACLEEILQPCVLQCGHIFCHQCC*AH 248
+ C E I P +L C H C C H
Sbjct: 879 ICCNEPIQNPLLLNCKHACCGDCLSEH 905
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 331 CVACLEEI-LQPCVLQCGHIFCHQC 260
C CLEE + + +CGH++C C
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSC 238
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 5.0
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 298 KVVIFPPSMQHMSFRYPLHW 357
K++ + ++Q +SF +PLHW
Sbjct: 694 KLIEYDIALQPVSFHHPLHW 713
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 360 FPMKWITKRHVLHAWRKYYNLVFFSVAIYSAINVARRTKQLCI 232
F ++ ++ +H WRK YN V + A+ S + VA LC+
Sbjct: 771 FIFNYVIRKRAIHWWRK-YNYV-LAAAMDSGVAVAGVVIFLCV 811
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 327 LHAWRKYYNLVFFSV--AIYSAINVARRTKQLCIV 229
++ WRK +++ FFSV + AI R+TK ++
Sbjct: 100 INEWRKLFDINFFSVVETVKYAIPHLRKTKGTIVI 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,400
Number of Sequences: 5004
Number of extensions: 50293
Number of successful extensions: 138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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