Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0994
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 46 3e-05
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 42 4e-04
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 38 0.007
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 36 0.016
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 36 0.022
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 36 0.022
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 36 0.022
At3g27710.1 68416.m03460 zinc finger protein-related contains si... 36 0.028
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 35 0.038
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 35 0.038
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 35 0.050
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 35 0.050
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 34 0.066
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 34 0.066
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 34 0.066
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 34 0.066
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 34 0.066
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.087
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.087
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 34 0.087
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa... 34 0.087
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 33 0.15
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 33 0.15
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 33 0.15
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 33 0.15
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 33 0.15
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 33 0.15
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 33 0.20
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 33 0.20
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 32 0.26
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa... 32 0.26
At2g28840.1 68415.m03506 ankyrin repeat family protein contains ... 32 0.26
At2g16090.1 68415.m01845 zinc finger protein-related contains si... 32 0.26
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 32 0.35
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 32 0.35
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 31 0.46
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 31 0.46
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 31 0.46
At2g44410.1 68415.m05523 expressed protein 31 0.46
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 31 0.46
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa... 31 0.61
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 31 0.61
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 31 0.61
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 31 0.61
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 30 1.1
At4g03000.2 68417.m00408 expressed protein contains similarity t... 30 1.1
At4g03000.1 68417.m00407 expressed protein contains similarity t... 30 1.1
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 30 1.1
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 30 1.1
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 30 1.4
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 30 1.4
At4g34370.1 68417.m04883 IBR domain-containing protein similar t... 29 1.9
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 29 1.9
At1g59560.1 68414.m06698 expressed protein contains similarity t... 29 1.9
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ... 29 2.5
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At5g60050.1 68418.m07530 PRLI-interacting factor-related contain... 29 3.3
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 28 4.3
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa... 28 5.7
At4g11360.1 68417.m01832 zinc finger (C3HC4-type RING finger) fa... 28 5.7
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 28 5.7
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 28 5.7
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 28 5.7
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 28 5.7
At5g57820.1 68418.m07231 hypothetical protein 27 7.5
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 27 7.5
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 27 7.5
At3g55530.1 68416.m06166 zinc finger (C3HC4-type RING finger) fa... 27 7.5
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 27 10.0
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 27 10.0
At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger) fa... 27 10.0
At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger) fa... 27 10.0
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 27 10.0
At3g07690.1 68416.m00923 NAD-dependent glycerol-3-phosphate dehy... 27 10.0
At2g25565.1 68415.m03060 hypothetical protein 27 10.0
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 27 10.0
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 27 10.0
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 27 10.0
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 27 10.0
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -3
Query: 361 IPN--EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+PN E++ + TC CLE + P L+CGHIFC+ C
Sbjct: 219 LPNSIELEYDLTCAICLETVFNPYALKCGHIFCNSC 254
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 41.5 bits (93), Expect = 4e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+VD + TC CL+ + P L CGHI+C+ C
Sbjct: 224 KVDIDLTCSICLDTVFDPISLTCGHIYCYMC 254
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 37.5 bits (83), Expect = 0.007
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
E+ ++ C CLE + +P VL CGH+ C C
Sbjct: 19 EIPDQFLCCVCLELLYKPIVLSCGHLSCFWC 49
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C AC E +++P VL CGH++C C
Sbjct: 192 CSACKELLVRPVVLNCGHVYCEGC 215
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 36.3 bits (80), Expect = 0.016
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 376 DQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+ L + + +++ C C + P V CGHIFC+QC
Sbjct: 664 EDLVSLLSRLESSPICCVCHDPPEDPVVTLCGHIFCYQC 702
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 35.9 bits (79), Expect = 0.022
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 346 DNEKTCVACLEEILQPCVLQCGHIFCHQC 260
D+ C CL+ + +P V CGH+FC C
Sbjct: 43 DSNFDCNICLDSVQEPVVTLCGHLFCWPC 71
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 35.9 bits (79), Expect = 0.022
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 346 DNEKTCVACLEEILQPCVLQCGHIFCHQC 260
D+ C CL+ + +P V CGH+FC C
Sbjct: 43 DSNFDCNICLDSVQEPVVTLCGHLFCWPC 71
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 35.9 bits (79), Expect = 0.022
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 355 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+++ +E +C CLE +P CGH FC +C
Sbjct: 716 DKLRDELSCAICLEICFEPSTTTCGHSFCKKC 747
>At3g27710.1 68416.m03460 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 537
Score = 35.5 bits (78), Expect = 0.028
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = -3
Query: 361 IPNEVDNEKT--CVACLEEILQPCVL---QCGHIFCHQCC*AH*TVVHCAGHHLQRILLC 197
+P+ V ++KT C C+E+ L V+ +CGH FC+ C H TV G + + +
Sbjct: 109 VPSLVTSKKTMKCDVCMEDDLPSNVMTRMECGHRFCNDCWIGHFTVKINEGESKRILCMA 168
Query: 196 H 194
H
Sbjct: 169 H 169
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 35.1 bits (77), Expect = 0.038
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -3
Query: 409 WQSVYXAKKHLDQLKEIPNEVDNEKTCVACLEEIL-----QPCVLQCGHIFCHQCC*AH* 245
W S K+H +E V + C +CL +I P +CG+ FC+ C A
Sbjct: 285 WHSNLSCKEHKSSGREPITTVWRQ--CRSCLHKIKLSEERMPVTCRCGYKFCY-ACGAQW 341
Query: 244 TVVHCAGHHLQRILL 200
+ C HHLQ +++
Sbjct: 342 KLGGCCSHHLQELIM 356
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 35.1 bits (77), Expect = 0.038
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 370 LKEIPNEVD---NEKTCVACLEEILQPCVLQCGHIFCHQC 260
+ I NE D N C CLE +P V CGH+FC C
Sbjct: 3 INTITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPC 42
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 34.7 bits (76), Expect = 0.050
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CL+++ P V CGH+FC C
Sbjct: 21 CNICLDQVRDPVVTLCGHLFCWPC 44
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 34.7 bits (76), Expect = 0.050
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 334 TCVACLEEILQPCVLQCGHIFCHQC 260
TC C + P V CGH+FC++C
Sbjct: 394 TCSVCSDPPKDPVVTLCGHVFCYEC 418
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 34.3 bits (75), Expect = 0.066
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CLE L P + CGHIFC C
Sbjct: 245 CPICLEYPLCPQITSCGHIFCFPC 268
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 34.3 bits (75), Expect = 0.066
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
E ++ C CL+ + +P CGH FC C
Sbjct: 189 ERSDDFDCTVCLKLLYEPATTPCGHTFCRSC 219
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 34.3 bits (75), Expect = 0.066
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
E ++ C CL+ + +P CGH FC C
Sbjct: 189 ERSDDFDCTVCLKLLYEPATTPCGHTFCRSC 219
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 34.3 bits (75), Expect = 0.066
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
E ++ C CL+ + +P CGH FC C
Sbjct: 189 ERSDDFDCTVCLKLLYEPATTPCGHTFCRSC 219
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 34.3 bits (75), Expect = 0.066
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
E ++ C CL+ + +P CGH FC C
Sbjct: 189 ERSDDFDCTVCLKLLYEPATTPCGHTFCRSC 219
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 33.9 bits (74), Expect = 0.087
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQCC*AH*T 242
C C E L P V +C H FC C H T
Sbjct: 312 CFICREPFLDPVVTKCKHYFCEHCALKHHT 341
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 33.9 bits (74), Expect = 0.087
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQCC*AH*T 242
C C E L P V +C H FC C H T
Sbjct: 312 CFICREPFLDPVVTKCKHYFCEHCALKHHT 341
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 33.9 bits (74), Expect = 0.087
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C C E +P V CGHIFC++C
Sbjct: 751 CYECNEPPEKPVVTLCGHIFCYEC 774
>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF01485:IBR domain
Length = 384
Score = 33.9 bits (74), Expect = 0.087
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = -3
Query: 421 ICMLWQSVYXAKKHLDQ----LKEIPNEVDNEKTCVACLEEILQPCVL----QCGHIFCH 266
I ML + V +K L ++P +KTC C ++ + ++ QCGH+FC
Sbjct: 119 IAMLIRDVQGIRKQFTSSIAVLIDVPALFHPKKTCTICFDDDINADMMFYIDQCGHMFCS 178
Query: 265 QCC*AH 248
+C H
Sbjct: 179 ECVKRH 184
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -3
Query: 373 QLKEIPNEVDNEKTCVAC--LEEILQPCV---LQCGHIFCHQC 260
QL E+ N+ ++ + C C + E+ Q CV +CGH FC+ C
Sbjct: 301 QLNELANQ-ESWRQCSKCKHMIELTQGCVRVICRCGHEFCYGC 342
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -3
Query: 346 DNEKTCVACLEEILQP----CVLQCGHIFCHQCC*AH*TVVHCAG 224
D++KTC C ++ +P V CGH FC +C H V AG
Sbjct: 168 DHDKTCSICSDDNFEPELMFSVALCGHEFCVECVKRHIEVRLLAG 212
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 33.1 bits (72), Expect = 0.15
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGHIFCHQCC*AH 248
++D + C C++ I + CGH FC+ C H
Sbjct: 45 DLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITH 79
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 358 PNEVD-NEKTCVACLEEILQPCVLQCGHIFCHQC 260
P E+ N+ TC+ C EE+ L CGH+F C
Sbjct: 103 PEELSSNDATCIICREEMTSAKKLVCGHLFHVHC 136
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 358 PNEVD-NEKTCVACLEEILQPCVLQCGHIFCHQC 260
P E+ N+ TC+ C EE+ L CGH+F C
Sbjct: 211 PEELSSNDATCIICREEMTSAKKLVCGHLFHVHC 244
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 33.1 bits (72), Expect = 0.15
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+++ E C CL+ + +P +L C H+FC C
Sbjct: 18 KLELELKCPLCLKLLNRPVLLPCDHVFCDSC 48
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 33.1 bits (72), Expect = 0.15
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+++ E C CL+ + +P +L C H+FC C
Sbjct: 18 KLELELKCPLCLKLLNRPVLLPCDHVFCDSC 48
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 32.7 bits (71), Expect = 0.20
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 379 LDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQCC 257
+D E +E+ + + CV C+ P + CGH+ C + C
Sbjct: 315 VDDEPEDADEIPDGELCVICVSRRRVPAFIPCGHVVCCRRC 355
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 32.7 bits (71), Expect = 0.20
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQCC*AH*T 242
C C E + P V +C H FC C H T
Sbjct: 277 CFICREPFVDPVVTKCKHYFCEHCALKHHT 306
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 32.3 bits (70), Expect = 0.26
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C C E++ P +L+C H+FC C
Sbjct: 365 CAICQEKMHTPILLRCKHMFCEDC 388
>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 872
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 260
E N+ C C + C L CGH + C+QC
Sbjct: 814 EASNKSLCAICFDAPRDCCFLPCGHCVSCYQC 845
>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 456
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 355 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+EV + + C C E++ V CGH C QC
Sbjct: 311 SEVSDTELCCICFEQVCTIEVKDCGHQMCAQC 342
>At2g16090.1 68415.m01845 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 593
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 334 TCVACLEEI--LQPCVLQCGHIFCHQCC*AH*TVVHCAGHHLQRILLCH 194
+C C+E++ Q + CGH FC+ C H TV G + I + H
Sbjct: 123 SCDICVEDVPGYQLTRMDCGHSFCNNCWTGHFTVKINEGQSKRIICMAH 171
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 31.9 bits (69), Expect = 0.35
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQCC*AH*T 242
C C L P V C H FC +C H T
Sbjct: 86 CSICQNPFLDPVVTNCNHYFCDKCALKHHT 115
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 31.9 bits (69), Expect = 0.35
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 355 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
N+ + C C E P V CGH+FC C
Sbjct: 20 NDQGGDFECNICFELAQDPIVTLCGHLFCWPC 51
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 31.5 bits (68), Expect = 0.46
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 343 NEKTCVACLEEILQPCVLQCGHIFCHQC 260
N K C CLE P + C H C +C
Sbjct: 1036 NSKECPICLESADDPVLTPCAHRMCREC 1063
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 31.5 bits (68), Expect = 0.46
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CL+ P V CGH+FC C
Sbjct: 44 CNICLDTAHDPVVTLCGHLFCWPC 67
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 367 KEIPNEVDNEK-TCVACLEEILQPCVLQCGHIFCHQC 260
K + V+ K +C CL Q +CGHIFC +C
Sbjct: 114 KAVAPPVEEPKFSCPICLCPFTQEVSTKCGHIFCKKC 150
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 31.5 bits (68), Expect = 0.46
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CLE+ P + CGH+FC C
Sbjct: 125 CNICLEKAEDPILTCCGHLFCWGC 148
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 31.5 bits (68), Expect = 0.46
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CL+ P V CGH++C C
Sbjct: 141 CYICLDLSKDPVVTNCGHLYCWSC 164
>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 312
Score = 31.1 bits (67), Expect = 0.61
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -3
Query: 346 DNEKTCVACLEEILQP----CVLQCGHIFCHQCC*AH 248
D+ KTC C + ++P V CGH FC +C H
Sbjct: 158 DHNKTCSICSGDNIEPEQIFSVALCGHEFCMECVKQH 194
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 31.1 bits (67), Expect = 0.61
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CL P CGH+FC C
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSC 350
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 31.1 bits (67), Expect = 0.61
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQCC*AH*T 242
CV CLE+ + CGH+ C C +H T
Sbjct: 296 CVICLEQEYNAVFVPCGHMCCCTACSSHLT 325
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 31.1 bits (67), Expect = 0.61
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CL+ P V CGH+FC C
Sbjct: 23 CNICLDLAQDPIVTLCGHLFCWPC 46
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 349 VDNEKTCVACLEEILQP-CVLQCGHIFCHQCC*AH*TVVH-CAGHHLQRILLCH 194
++ K C AC EIL+P L C + C +C V H C H L LCH
Sbjct: 389 LEETKQCKACGTEILKPLSCLVCEYALCIRCATLPKKVKHRCDDHFLS---LCH 439
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 355 NEVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 260
+++ E+ CV CL E + L C H + C +C
Sbjct: 752 SKIKRERECVMCLSEEMSVIFLPCAHQVLCSKC 784
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 355 NEVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 260
+++ E+ CV CL E + L C H + C +C
Sbjct: 752 SKIKRERECVMCLSEEMSVIFLPCAHQVLCSKC 784
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 358 PNEVD-NEKTCVACLEEILQPCVLQCGHIFCHQC 260
P E+ ++ TC+ C EE+ L CGH+F C
Sbjct: 282 PEELTASDATCIICREEMTNAKKLICGHLFHVHC 315
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CL+ + P GH+FC +C
Sbjct: 43 CSLCLKPFIDPMCCHKGHVFCREC 66
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 373 QLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+L+E N C C + + +++C H+FC QC
Sbjct: 317 RLQEEVKNCKNILKCGVCFDRPKEVVIVKCYHLFCQQC 354
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 352 EVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 260
+V E+ CV CL E + L C H + C +C
Sbjct: 761 KVKRERECVMCLSEEMSVIFLPCAHQVLCFKC 792
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 370 LKEIPNEVDNEKTCVACLEEILQPCVLQ-CGHIFCHQC 260
L E P+E++ E C CL E+ L+ C H+FC C
Sbjct: 1553 LGEKPDEIEVE--CPICLSEVDDGYSLEGCSHLFCKAC 1588
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 370 LKEIPNEVDNEKTCVACLEEILQPCVLQ-CGHIFCHQC 260
L E P+E++ E C CL E+ L+ C H+FC C
Sbjct: 1550 LGEKPDEIELE--CPICLSEVDDGYSLEGCSHLFCKAC 1585
>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
melanogaster}; contains Pfam profile PF01485: IBR domain
Length = 597
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 343 NEKTCVACLEEILQPCV--LQCGHIFCHQCC*AH*TV 239
++ +C C+E++ + + CGH FC+ C H TV
Sbjct: 119 SQMSCDVCMEDLPGDHMTRMDCGHCFCNNCWTEHFTV 155
>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 398
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -3
Query: 373 QLKEIPNEVDNEKTCVAC--LEEILQPC---VLQCGHIFCHQC 260
+L+++ NE + + C C + E+ C V +CGH FC+QC
Sbjct: 308 RLRDLANE-KSWRQCSKCKHMIELSSGCISVVCRCGHTFCYQC 349
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 346 DNEKTCVACLEEILQPCVLQCGHIFCHQCC 257
D CV CL++ ++CGH+ C C
Sbjct: 286 DTPDLCVVCLDQKYNTAFVECGHMCCCTPC 315
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 334 TCVACLEEILQPCVLQCGHIFCHQC 260
TC C+ + +CGHIFC C
Sbjct: 147 TCPICMCPFTEEMSTKCGHIFCKGC 171
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 334 TCVACLEEILQPCVLQCGHIFCHQC 260
TC C+ + +CGHIFC C
Sbjct: 147 TCPICMCPFTEEMSTKCGHIFCKGC 171
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 334 TCVACLEEILQPCVLQCGHIFCHQC 260
TC C+ + +CGHIFC C
Sbjct: 147 TCPICMCPFTEEMSTKCGHIFCKGC 171
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 406 QSVYXAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHI-FCHQC 260
Q +Y +D E NE K CV CL E VL C H+ C C
Sbjct: 220 QEIYGIGNTVDDNGEDANE--RGKECVICLSEPRDTTVLPCRHMCMCSGC 267
>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 766
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -3
Query: 406 QSVYXAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGH--IFCHQCC 257
Q + + KH +LK+ D EK C AC+ I C H F H+ C
Sbjct: 470 QIKHFSHKHPLKLKKYNGVRDAEKQCQACILPINSSDFYNCRHCDFFLHEVC 521
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 346 DNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+ E +C C+ +I CGH FC C
Sbjct: 307 EGELSCCVCMVKIKGASFTPCGHTFCKLC 335
>At5g60050.1 68418.m07530 PRLI-interacting factor-related contains
weak similarity to PRLI-interacting factor G
(GI:11139264) [Arabidopsis thaliana]
Length = 499
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 379 LDQLKEIPNEVDNEKTCVACLEEILQP 299
L+ L+ +P D E+T V CLEE+ P
Sbjct: 200 LEHLEAVPWSEDEEETVVTCLEELHLP 226
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -3
Query: 415 MLWQSVYXAKKHLDQLKEIPNEVDNE---KTCVACLEEILQPCVLQCGHI-FCHQC 260
+LW V + L ++ I N VD K CV CL E VL C H+ C C
Sbjct: 256 ILW--VNKRRYELLEIYGIENTVDGSDEGKECVVCLSEPRDTTVLPCRHMCMCSGC 309
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = -3
Query: 343 NEKTCVACLEEILQPCVLQCGHIFCHQC 260
N+ C C+ + CGH FC C
Sbjct: 162 NDSVCCVCMGRKKGAAFIPCGHTFCRVC 189
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CL+ +P + CGH++C C
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPC 162
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CL+ +P + CGH++C C
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPC 162
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C CL+ +P + CGH++C C
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPC 162
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -3
Query: 406 QSVYXAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+S+ + +L++ +E C AC + + + +C H+FC+ C
Sbjct: 801 RSLIEGSSAIQKLRQELSEFKEILKCKACNDRPKEVVITKCYHLFCNPC 849
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 385 KHLDQLK-EIPNEVDNEKTCVACLEEILQPCVLQCGH-IFCHQC 260
+ +D+L+ NE + ++ C+ C+++ + L C H + C C
Sbjct: 634 EEIDKLEGSYDNEANYDRECIICMKDEVSVVFLPCAHQVVCGSC 677
>At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 388 KKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
KK ++ EI E++ E+ C C+E + + C H C +C
Sbjct: 127 KKDESEMSEI--EIEREEECGICMEMNSKVVLPNCTHSLCIKC 167
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 370 LKEIPNEVDNEKTCVACLEEILQPCVLQC 284
+ EI N++ +EK C A + I CV++C
Sbjct: 169 IPEIANQMASEKECQASVSGIEDDCVVEC 197
>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/32 (31%), Positives = 10/32 (31%)
Frame = -3
Query: 355 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
N C C PC C H FC C
Sbjct: 2 NSPPENDLCSICHSHFTAPCQANCSHWFCGNC 33
>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 262
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/27 (33%), Positives = 11/27 (40%)
Frame = -3
Query: 340 EKTCVACLEEILQPCVLQCGHIFCHQC 260
+ C C PC CGH +C C
Sbjct: 71 DDVCPICFGSFTVPCRGNCGHWYCGNC 97
>At4g11360.1 68417.m01832 zinc finger (C3HC4-type RING finger)
family protein (RHA1b) identical to RING-H2 finger
protein RHA1b [Arabidopsis thaliana] GI:3790567
Length = 157
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = -3
Query: 346 DNEKTCVACLEEILQPCVLQ----CGHIFCHQC 260
D E C CL + + ++ CGH+F H+C
Sbjct: 80 DPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRC 112
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe}; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00628:
PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1648
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 367 KEIPNEVDNEKTCVACLEEIL--QPCVLQCGHIFCHQC 260
+E N + ++ C C EIL Q V QCGH C C
Sbjct: 1316 QESENLLKRDEACPIC-HEILRNQKMVFQCGHSTCCNC 1352
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -3
Query: 361 IPNEVDNEKTCVACLEEILQPCV--LQCGHIFCHQC 260
+P D+E TC C + + + CGH FC C
Sbjct: 127 VPPSDDSELTCGICFDSYPPEKIASVSCGHPFCTTC 162
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 364 EIPNEVDNEKTCVACLEEILQPC-VLQCGHIFCHQC 260
E + + +C+ C E +L CGH FC+ C
Sbjct: 289 EATEKAPAQVSCIICWTEFSSSRGILPCGHRFCYSC 324
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -3
Query: 340 EKTCVACLE----EILQPCVLQCGHIFCHQC 260
E C CL+ E P VL CGH C +C
Sbjct: 3 EPECPVCLQSYDGESTVPRVLACGHTACEEC 33
>At5g57820.1 68418.m07231 hypothetical protein
Length = 161
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 325 ACLEEILQPCVLQCGHIFCHQC 260
A L + + CVL CGH++ +C
Sbjct: 117 ASLSGLQEACVLSCGHVYHFKC 138
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 301 PCVLQCGHIFCHQC 260
P +LQCGH FC C
Sbjct: 24 PLLLQCGHGFCKDC 37
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -3
Query: 340 EKTCVACLEEILQPCVLQCGHIFCHQC 260
E C CL L C H+FC+ C
Sbjct: 348 ELKCPICLSLYNSAVSLSCNHVFCNAC 374
>At3g55530.1 68416.m06166 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 273
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 391 AKKHLDQLKEIPNEVDNEKTCVACLEEI 308
A+K LD E ++E TC CLE++
Sbjct: 191 AEKMLDSANESKKGTEDELTCSVCLEQV 218
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C C++ +P CGH FC +C
Sbjct: 129 CSICIQLPERPITTPCGHNFCLKC 152
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -3
Query: 340 EKTCVACLEEILQPCVLQCGHIFCHQC 260
E +C C E + P C H FC C
Sbjct: 492 EFSCQICREVLSLPVTTPCAHNFCKAC 518
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 27.1 bits (57), Expect = 10.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C C + ++ ++ CGH+ C C
Sbjct: 4660 CQICQTKEVEVTIVPCGHVLCRHC 4683
>At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 172
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -3
Query: 397 YXAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
Y K D+ K +++ E+ C CLE + + C H C C
Sbjct: 124 YRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINC 169
>At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -3
Query: 397 YXAKKHLDQLKEIPNEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
Y K D+ K +++ E+ C CLE + + C H C C
Sbjct: 124 YRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINC 169
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = -3
Query: 340 EKTCVACLEEILQPCVLQCGHIFCHQC 260
E +C C+ + CGH FC C
Sbjct: 199 EISCCVCMVRSKGAAFIPCGHTFCRLC 225
>At3g07690.1 68416.m00923 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 455
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 289 EEHKVVIFPPSMQHMSFRYPLHWEFLLIGPNVFS--LSKHFATAYKC 423
E H ++ P M H + PL L GPN+ S +K +A A C
Sbjct: 195 EPHPRIVTPTQMIHRATGIPLENILYLGGPNIASEVYNKEYANARIC 241
>At2g25565.1 68415.m03060 hypothetical protein
Length = 206
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 367 KEIPNEVDNEKTCVACLEEILQPCV 293
KE EV++E TC CLE L V
Sbjct: 138 KEETQEVEDESTCPICLENFLNDYV 162
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C C++ +P CGH FC +C
Sbjct: 129 CSICIQLPERPVTTPCGHNFCLKC 152
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C C++ +P CGH FC +C
Sbjct: 129 CSICIQLPERPVTTPCGHNFCLKC 152
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 331 CVACLEEILQPCVLQCGHIFCHQC 260
C C V CGH+FC+QC
Sbjct: 919 CGICNVAPKDAVVSLCGHVFCNQC 942
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 355 NEVDNEKTCVACLEEILQPCVLQCGHIFCHQC 260
+E +E+ C C + V C H+FC C
Sbjct: 571 DENKSEQECGLCHDPAEDYVVTSCAHVFCKAC 602
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,589
Number of Sequences: 28952
Number of extensions: 252973
Number of successful extensions: 879
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -