Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0992
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    28   0.78 
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   2.4  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   4.2  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   4.2  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.3  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    25   7.3  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   9.6  

>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 66  MKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKL 197
           M  E N ++ K+R+++R      +FKE    D L  + +E   L
Sbjct: 734 MPRELNSNESKLRAYRRVNEVIEEFKEIPYLDPLEHMHIESSTL 777


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 352 TVIIDYSSXXKLLDFLPCYRRTLFSQESAEERLKPLNSF 236
           T  + + S   LL    CY RT+  QE+A  R++  N+F
Sbjct: 259 TSFMGFFSTLCLLFMKECYSRTITEQEAARLRVEYNNNF 297


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 84  DSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFRR 260
           + +KK R   R        K +T  D LA  EV  E  IST  E       K+  G +R
Sbjct: 184 EREKKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSAKGKQAAGSKR 242


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +3

Query: 63  EMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKL-ISTAPETRRPQLEK 239
           ++ P   DS   +RSH    S    F+E    +  A  E  LE +  S    +      K
Sbjct: 678 DVSPTRPDSISSVRSHTAVESPRSSFEELQPSEIPAESEFTLENVPTSLIRSSYALNTRK 737

Query: 240 EFKGFRRSSADS 275
             + F  SSA +
Sbjct: 738 TRRNFSHSSASN 749


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 416 LSFTTTNLXSIWCTLSVVGVADCN 345
           LSF  +   S WC   ++ +A CN
Sbjct: 106 LSFVNSPADSFWCDSDLILLASCN 129


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 60  KEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRP 227
           K+ K E    DK+  S +R  SGS D +E  K+    + + E    +    E  RP
Sbjct: 197 KKKKKEHKKKDKESSSKKRK-SGSSDKEEKKKKKIKLKDKPESTSSVEKVKEGNRP 251


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +3

Query: 30  YQSLLSRLLHKEMKPETNDS 89
           ++++LSRL +KE+ P T+++
Sbjct: 346 WETMLSRLYNKELTPSTDEN 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,739
Number of Sequences: 5004
Number of extensions: 34672
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)