Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0992
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 31 0.45
05_01_0020 + 143273-143592,144278-144371,144466-144537,144675-14... 29 1.8
02_04_0027 - 19014033-19014127,19014219-19014315,19014560-190146... 29 3.2
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 28 5.6
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 28 5.6
01_01_0887 + 6978869-6979053,6979183-6979558,6979651-6979734,697... 28 5.6
07_03_1425 + 26489446-26491425 27 7.4
06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387... 27 7.4
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383... 27 7.4
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177... 27 7.4
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 27 9.8
11_01_0047 + 358370-360107,360713-361353 27 9.8
08_02_0151 - 13287964-13288661,13289616-13289812,13290005-132905... 27 9.8
08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492... 27 9.8
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 27 9.8
02_05_0298 + 27671473-27672147 27 9.8
01_01_1213 - 9769268-9769975 27 9.8
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 31.5 bits (68), Expect = 0.45
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 60 KEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPET-RRPQLE 236
K KP T+D KK R H + S S D+ + D+ + E + T+ + R +
Sbjct: 162 KTQKPPTHDKQKKKRKHYSSDSYSSDYSDTQSSDSGSESESYSSSSLDTSSSSDHRHKRR 221
Query: 237 KEFKGFRRSSA 269
K K + SA
Sbjct: 222 KSSKKDKHRSA 232
>05_01_0020 +
143273-143592,144278-144371,144466-144537,144675-144786,
145179-145327,145484-145510,145931-145981
Length = 274
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 6 RVKLCLCCYQSLLSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDA-LARLEV 182
RV CL C+ S+ + +L ++N+S++ + Q + G + K DA LAR +
Sbjct: 23 RVSFCLSCFDSIFNSILFNSSTKQSNESNQ--TNPQISKRGDSVDDKIKKLDAELARYKD 80
Query: 183 ELEK 194
+++K
Sbjct: 81 QIKK 84
>02_04_0027 -
19014033-19014127,19014219-19014315,19014560-19014673,
19014759-19014923,19015169-19015306,19015402-19015478,
19015572-19015686,19015756-19015861,19016182-19016243,
19016407-19016472,19016628-19016810,19017359-19017415,
19017848-19017896,19017983-19018131,19019203-19019250,
19020061-19020201
Length = 553
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 176 GGGAGEAHLHGPGNQASAARERVQRLQTLFSRFLAEQG 289
GGG G A H G A+AA + RFL +G
Sbjct: 2 GGGGGHAGRHSVGPAAAAAAAAAEAASAAADRFLRSRG 39
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 176 GGGAGEAHLHGPGNQASAARERVQRLQTLFSRFLAE 283
GGG G H HG G R Q LQ+ ++ AE
Sbjct: 14 GGGRGHGHGHGHGGGGGGPAARKQPLQSSMAQPKAE 49
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 170 STGGGAGEAHLHGPGNQASAARERVQRLQTLFSRFLAEQGPSV 298
+ GGG H ++SAAR R +R L SR++A Q V
Sbjct: 41 AAGGGVAAGHQPDEEPESSAARRR-RRESRLLSRWVARQAEEV 82
>01_01_0887 +
6978869-6979053,6979183-6979558,6979651-6979734,
6979838-6979903,6980938-6981007,6981333-6981718,
6982114-6982154,6982661-6982757
Length = 434
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -3
Query: 213 PGPWR*ASPAPPPVERGHHVW-WPP 142
PG + A P PPP ++ H W W P
Sbjct: 5 PGAFGVAPPPPPPQQQQHQPWQWQP 29
>07_03_1425 + 26489446-26491425
Length = 659
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 167 RSTGGGAGEAHLHGPGNQASAARERVQRL 253
R G G H+ GP A+A RER+ +
Sbjct: 534 RPDGSGLRRVHVAGPAGSAAADRERINHV 562
>06_01_0541 -
3874476-3874694,3874816-3874868,3875944-3876055,
3876143-3876321,3876358-3877195
Length = 466
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 146 GHQT*CPRSTGGGAGEAHLHGPGNQASAARERVQRLQTLFS 268
GH+T PR+ +GE P + ++A +R +L + F+
Sbjct: 13 GHKTLLPRAFSSSSGEGMFPPPTSDPASADQRTTKLSSHFA 53
>06_01_0531 -
3836420-3836638,3836760-3836812,3837888-3837999,
3838087-3838265,3838302-3839139
Length = 466
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 146 GHQT*CPRSTGGGAGEAHLHGPGNQASAARERVQRLQTLFS 268
GH+T PR+ +GE P + ++A +R +L + F+
Sbjct: 13 GHKTLLPRAFSSSSGEGMFPPPTSDPASADQRTTKLSSHFA 53
>02_05_0419 -
28814754-28816114,28816749-28817435,28817554-28817774,
28818536-28818750
Length = 827
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 90 DKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLIST 206
DKK S+ R PS S+ K+ +K+ +L+ +V IST
Sbjct: 719 DKKSISNVRRPSASKSQKKQSKKASLSSQKVRTLSSIST 757
>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 45 SRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATK-RDALARLEVELEKLISTAPETR 221
+R L KE+K T D ++ +R S+DF++A + RD L+ ++ LI + E
Sbjct: 990 ARELDKELKQITKDKNEAVR--------SQDFEKAGELRDREMELKAQITALIDKSKEMS 1041
Query: 222 RPQLEKEFKGFRRSSAD 272
+ + E G + AD
Sbjct: 1042 KAETESGETGPLVNEAD 1058
>11_01_0047 + 358370-360107,360713-361353
Length = 792
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 143 GGHQT*CPRSTGGGAGEAHLHGPGNQASAARERVQRLQTLFSRFLAEQGP 292
GG QT ++ GGGAG A G G + + V+ + + + GP
Sbjct: 433 GGKQTTSSKAAGGGAGAAAGGGRGEKPGSGAAEVESGGEVGGKLVHFDGP 482
>08_02_0151 -
13287964-13288661,13289616-13289812,13290005-13290523,
13290912-13291114
Length = 538
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 138 FKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFRRSSADS 275
F+ R A + + EKL AP T + K F+ F SAD+
Sbjct: 18 FRSVRPRVAALQKTLPTEKLAVPAPPTFKTMANKTFREFAAPSADN 63
>08_02_0128 -
12848227-12848619,12848699-12848827,12849108-12849279,
12849336-12849488,12850017-12850271,12850846-12851000,
12853319-12853456,12853545-12853715,12853878-12854063,
12854169-12854290,12855617-12855752,12856108-12856203,
12856294-12856356,12856846-12856993,12857324-12857514,
12857916-12857989,12858039-12858171,12858299-12858460,
12861649-12861745,12861866-12861962,12863994-12864141
Length = 1072
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 209 PGNQASAARERVQRLQTLFSRFLAEQGPSVTW 304
PG RE ++RL+ + ++++ Q P + W
Sbjct: 166 PGKVPKTKREEIERLERVANKYIRGQIPHIGW 197
>08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 85 TPIKRFAVTSGRRQGLVTSRRPPNVMPSLD 174
TP KRF V G V S+RPP P LD
Sbjct: 1041 TPTKRFLVYPYMSNGTVASQRPP-YEPPLD 1069
>02_05_0298 + 27671473-27672147
Length = 224
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 213 ETRRPQLEKEFKGFRRSSADSWLNRVRR*HGRK 311
ETR P FKG RR + W+ VR HG++
Sbjct: 49 ETRHPV----FKGVRRRNPGRWVCEVREPHGKQ 77
>01_01_1213 - 9769268-9769975
Length = 235
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 189 PAPPPVERGHHVWWPP*SHETLTAS 115
PAPPP HH W P + + +TA+
Sbjct: 16 PAPPPPPP-HHTWLSPAADDAITAA 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,914
Number of Sequences: 37544
Number of extensions: 297430
Number of successful extensions: 1173
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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