Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0992
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                 43   1e-04
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              31   0.46 
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               29   2.5  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_45251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 29   3.3  
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 29   3.3  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     29   3.3  
SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_14568| Best HMM Match : Col_cuticle_N (HMM E-Value=6.1)             28   4.3  
SB_48974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_17463| Best HMM Match : Protamine_P2 (HMM E-Value=5.6)              27   7.6  

>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 209 PGNQASAARERVQRLQTLFSRFLAEQGPSVTWEKIEKLXXGAVIDY 346
           P  Q   A + +   + LF R+L E GPSV WEKI     G V++Y
Sbjct: 201 PAPQKDLASKEMNNFKGLFKRYLQETGPSVVWEKIHPPPKGLVVNY 246



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 132 RDFKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFR 257
           + FK  +++DA  R+E E+ KLI  AP  ++    KE   F+
Sbjct: 175 QQFKSLSRKDAFERMETEINKLIEFAPAPQKDLASKEMNNFK 216


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 66  MKPETNDSDKKIRSHQRTPSGSRDFKEATKRD---ALARLEVELEKLISTAPETRRPQLE 236
           ++ E    DK++R+++R  S   D  EA K+D   A  + EVE  + ++   + R  +++
Sbjct: 302 LREEVGSKDKQVRNYERKNSDLEDQVEALKQDCSQAQMKAEVESRQRMNLEKDLRNSEMK 361

Query: 237 KEFKGFRR 260
             ++ + R
Sbjct: 362 VLWRSYGR 369


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 472 GXGSXIWGPXSPWMYPGXR*ASPPPTCXAYGARCPSL-AWQT 350
           G G+   GP  PW  PG     PPP         PS+  WQT
Sbjct: 378 GAGNGPGGPPPPWSKPGGILPGPPPPGPPMLNMAPSIPPWQT 419


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 42  LSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLI---STAP 212
           L   L K  K    + ++K R    T +  R ++ A K+D L     ELE L+   ST  
Sbjct: 555 LQTRLAKSAKELEEELERK-REDYNTAADERRYQMAKKKDTLQATRSELETLVKDLSTKT 613

Query: 213 ETRRPQLEKEFK 248
              R  LEKE +
Sbjct: 614 GKERLALEKEIQ 625


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 207 PWR*ASPAPPPVERGHHVWWPP*SHETLTASAGDCES 97
           PW    P  PP    H  W+PP S E   +S G+CES
Sbjct: 294 PW----PTTPPGCHFHGKWYPPGS-EISMSSYGECES 325


>SB_45251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +2

Query: 167 RSTGGGAGEAHLHGPGNQASAAR-----ERVQRLQTLFSRFLAEQG 289
           R+  G +GE++    GN+  A       ER+ RL+++FS  + +QG
Sbjct: 64  RALHGSSGESYYDQYGNELKARSHPKLTERLHRLESIFSEHMKQQG 109


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 63  EMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARL--EVELEKLISTAPET 218
           E KP+ N  +K     Q TP  SR   + T  +A  +   +  L++ + T+P+T
Sbjct: 299 EDKPKENQQNKPEDKQQTTPKTSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKT 352


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 63  EMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARL--EVELEKLISTAPET 218
           E KP+ N  +K     Q TP  SR   + T  +A  +   +  L++ + T+P+T
Sbjct: 79  EDKPKENQQNKPEDKQQTTPKTSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKT 132


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 39  LLSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPET 218
           LL +L   E     +   + + SH RT SGS +  E TK +   RL+  +++L S     
Sbjct: 698 LLQKLDRNETHTSRDQPWESVSSHSRTSSGSSNDMEFTKEEE-TRLKSYIQQLRSERSTI 756

Query: 219 RRPQLEKE 242
               LE E
Sbjct: 757 GSTVLELE 764


>SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +3

Query: 60  KEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEK 239
           +E++P      +   S +  P   R+ +E   R ALA+L  ++ + + T    R   ++K
Sbjct: 8   RELQPSEIQRKEASASREELPERKREAREKN-RAALAKLSAQIWRGVPTCIPCRLHHVQK 66

Query: 240 EFKGFRR 260
           E  G ++
Sbjct: 67  EIAGAKQ 73


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 69   KPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEKE 242
            K E +D  + IR         RD K  + R+   + E ELE++     E  +   +KE
Sbjct: 1094 KIEASDEIENIRKEMANAVSQRDLKNESLRNRAEQAEKELEEVFGREQELLQSHGQKE 1151


>SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 27  CYQSLLSRLLHKEMKPETNDSDKKIRSHQRTPSGSR 134
           C Q L S+LL +  + + +D D++ R H+R  S SR
Sbjct: 306 CLQGLESQLLERSHRKDRDDDDRE-RRHRRRRSRSR 340


>SB_14568| Best HMM Match : Col_cuticle_N (HMM E-Value=6.1)
          Length = 70

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -3

Query: 195 ASPAPPPVER-GHHVWWPP 142
           ASP PPPV+  GH   WPP
Sbjct: 46  ASPPPPPVQIIGHTFVWPP 64


>SB_48974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 30  YQSLLSRLLH--KEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLIS 203
           Y + L++ L   +E K      DK+  +  R+P G      ++     AR E+ L     
Sbjct: 62  YNTALTQWLDWIQEAKDSGKGWDKETGAQLRSPHGLPSPPSSSPSTPFARSELALPTPPY 121

Query: 204 TAPETRRPQLEKEFKGFRRSSA 269
           + P T +P+ +K  +  R+  A
Sbjct: 122 STPRTTKPKAKKSAESVRKQIA 143


>SB_17463| Best HMM Match : Protamine_P2 (HMM E-Value=5.6)
          Length = 148

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 25/93 (26%), Positives = 41/93 (44%)
 Frame = +3

Query: 57  HKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLE 236
           H+E + E N   K++R H R P GS +     + DA A  +   E+ +    E  R  L+
Sbjct: 30  HEEREREEN---KQVRKHVRIPKGSSE----VQSDA-APKQRGRERGLERVEEKERFDLQ 81

Query: 237 KEFKGFRRSSADSWLNRVRR*HGRKSRSXXKEL 335
              +  R+   +    R R+ HG   +   KE+
Sbjct: 82  GHKQRERQRQRERERERERKIHGMIMKELEKEM 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,379,469
Number of Sequences: 59808
Number of extensions: 294573
Number of successful extensions: 849
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)