Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0992
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 34 0.058
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 34 0.058
Z81568-12|CAH10810.1| 493|Caenorhabditis elegans Hypothetical p... 34 0.077
Z81568-8|CAD89739.1| 496|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z81568-7|CAD18874.1| 497|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z81568-6|CAB04598.1| 511|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z81568-5|CAB04597.1| 522|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z81568-4|CAB04596.1| 509|Caenorhabditis elegans Hypothetical pr... 34 0.077
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 33 0.13
AF047660-9|AAC04433.3| 339|Caenorhabditis elegans Hypothetical ... 31 0.41
AF067940-3|AAC19207.1| 272|Caenorhabditis elegans Hypothetical ... 30 1.2
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 28 3.8
AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical ... 28 3.8
U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical pr... 28 5.0
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 27 6.7
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 27 6.7
Z81136-5|CAB03460.2| 733|Caenorhabditis elegans Hypothetical pr... 27 8.8
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 27 8.8
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 27 8.8
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 27 8.8
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 34.3 bits (75), Expect = 0.058
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Frame = +3
Query: 33 QSLLSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAP 212
+++ + LLH+ KP N + S TP S + + + L+ E ST P
Sbjct: 79 RNMTAPLLHQNQKPPKN-----LNSRPSTPQTSSNLNTPKRTPQVKNLQAE-----STTP 128
Query: 213 ETRRPQLEKEFKGFRRSSADSWLN--RVRR*HGRKSRSXXKEL*SIITVCHANDGQ 374
RP E + FRR+ + V R K R K+L ++I V H + G+
Sbjct: 129 TVSRPSSEVDLTSFRRNQLQNIAKAPSVAR-KTPKPRVADKDLINLIVVGHVDAGK 183
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 34.3 bits (75), Expect = 0.058
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Frame = +3
Query: 33 QSLLSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAP 212
+++ + LLH+ KP N + S TP S + + + L+ E ST P
Sbjct: 97 RNMTAPLLHQNQKPPKN-----LNSRPSTPQTSSNLNTPKRTPQVKNLQAE-----STTP 146
Query: 213 ETRRPQLEKEFKGFRRSSADSWLN--RVRR*HGRKSRSXXKEL*SIITVCHANDGQ 374
RP E + FRR+ + V R K R K+L ++I V H + G+
Sbjct: 147 TVSRPSSEVDLTSFRRNQLQNIAKAPSVAR-KTPKPRVADKDLINLIVVGHVDAGK 201
>Z81568-12|CAH10810.1| 493|Caenorhabditis elegans Hypothetical
protein K08E3.5f protein.
Length = 493
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 254 QTLFSRFLAEQGPSVTWEKIEKLXXGAVIDYYSL 355
+ LF+RFL + P+V W KIE L GA+ Y SL
Sbjct: 46 RNLFARFLRAK-PTVDWSKIEPLPEGAIRPYKSL 78
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 430 TSMGXKGPISVIQXXYDLAFXXL 498
TSMG KGP SVI DL F L
Sbjct: 105 TSMGCKGPKSVISVRNDLTFLDL 127
>Z81568-8|CAD89739.1| 496|Caenorhabditis elegans Hypothetical
protein K08E3.5e protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 254 QTLFSRFLAEQGPSVTWEKIEKLXXGAVIDYYSL 355
+ LF+RFL + P+V W KIE L GA+ Y SL
Sbjct: 49 RNLFARFLRAK-PTVDWSKIEPLPEGAIRPYKSL 81
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 430 TSMGXKGPISVIQXXYDLAFXXL 498
TSMG KGP SVI DL F L
Sbjct: 108 TSMGCKGPKSVISVRNDLTFLDL 130
>Z81568-7|CAD18874.1| 497|Caenorhabditis elegans Hypothetical
protein K08E3.5d protein.
Length = 497
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 254 QTLFSRFLAEQGPSVTWEKIEKLXXGAVIDYYSL 355
+ LF+RFL + P+V W KIE L GA+ Y SL
Sbjct: 75 RNLFARFLRAK-PTVDWSKIEPLPEGAIRPYKSL 107
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +1
Query: 355 ATPTTDXXXXXXXXXXXXXXXXXXXTSMGXKGPISVIQXXYDLAFXXL 498
A PT D TSMG KGP SVI DL F L
Sbjct: 84 AKPTVDWSKIEPLPEGAIRPYKSLGTSMGCKGPKSVISVRNDLTFLDL 131
>Z81568-6|CAB04598.1| 511|Caenorhabditis elegans Hypothetical
protein K08E3.5c protein.
Length = 511
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 254 QTLFSRFLAEQGPSVTWEKIEKLXXGAVIDYYSL 355
+ LF+RFL + P+V W KIE L GA+ Y SL
Sbjct: 64 RNLFARFLRAK-PTVDWSKIEPLPEGAIRPYKSL 96
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 430 TSMGXKGPISVIQXXYDLAFXXL 498
TSMG KGP SVI DL F L
Sbjct: 123 TSMGCKGPKSVISVRNDLTFLDL 145
>Z81568-5|CAB04597.1| 522|Caenorhabditis elegans Hypothetical
protein K08E3.5b protein.
Length = 522
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 254 QTLFSRFLAEQGPSVTWEKIEKLXXGAVIDYYSL 355
+ LF+RFL + P+V W KIE L GA+ Y SL
Sbjct: 75 RNLFARFLRAK-PTVDWSKIEPLPEGAIRPYKSL 107
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 430 TSMGXKGPISVIQXXYDLAFXXL 498
TSMG KGP SVI DL F L
Sbjct: 134 TSMGCKGPKSVISVRNDLTFLDL 156
>Z81568-4|CAB04596.1| 509|Caenorhabditis elegans Hypothetical
protein K08E3.5a protein.
Length = 509
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 254 QTLFSRFLAEQGPSVTWEKIEKLXXGAVIDYYSL 355
+ LF+RFL + P+V W KIE L GA+ Y SL
Sbjct: 62 RNLFARFLRAK-PTVDWSKIEPLPEGAIRPYKSL 94
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 430 TSMGXKGPISVIQXXYDLAFXXL 498
TSMG KGP SVI DL F L
Sbjct: 121 TSMGCKGPKSVISVRNDLTFLDL 143
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 57 HKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRD 161
HKE K + + S ++ RS R+P GSR+ +E RD
Sbjct: 6 HKEHKRKRSRSKERKRSRSRSPRGSREHREHRDRD 40
>AF047660-9|AAC04433.3| 339|Caenorhabditis elegans Hypothetical
protein T09A12.1 protein.
Length = 339
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 60 KEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAP 212
K+ K E+N+ DKK+R +R ++ + ++ + + E+E +S AP
Sbjct: 93 KKGKKESNEEDKKMRDSERQKREKKEVPKEMRQSMMGSVFEEIEGPVSPAP 143
>AF067940-3|AAC19207.1| 272|Caenorhabditis elegans Hypothetical
protein F36F12.8 protein.
Length = 272
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 117 TPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFRRSSADSWLNR 287
+PS S ++ RDA + ELE + PE + E+K F ++ D+ L R
Sbjct: 161 SPSTSNSTTSSSSRDASGSPQPELELKLEPEPEPEPNEEALEYKRFFNNAVDTILQR 217
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 28.3 bits (60), Expect = 3.8
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 63 EMKPETNDSDKKIRSHQRTPSGSRD-FKEATKRDALARLEVELEKLIS-TAPETRRPQLE 236
E K +T + +K +S + G ++ K+A+K+D + + ELEK S A T P+
Sbjct: 2239 ENKKDTKEGEKG-KSKDKEKDGEKEKCKDASKKDDVTSEKNELEKRASDAAAATNAPETN 2297
Query: 237 KE 242
K+
Sbjct: 2298 KD 2299
>AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical
protein T10D4.6 protein.
Length = 796
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 57 HKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALA 170
HKE+KP + KK+ + PSGS D+K TK D +A
Sbjct: 698 HKELKP----ASKKLHT---PPSGSLDWKTWTKPDVIA 728
>U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical
protein C09B9.3 protein.
Length = 884
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 54 LHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEV--ELEKLISTAPETRRP 227
+ KE T + K +T + + K DA+ +E ELEKL + E R
Sbjct: 470 VEKESDKNTKNKKKSSGEQNKTVKSGAENMKILKPDAVKYVEKQKELEKLNAAKKEEERM 529
Query: 228 QLEK 239
+LEK
Sbjct: 530 ELEK 533
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 78 TNDSDKKI-RSHQRTPSGSRDFKEATKRDALARLEVELEKLISTA 209
T++ DK + S G RDF +A R +++L+KLI +A
Sbjct: 1144 TSNDDKYVGTSAVELAQGLRDFTDAITEIVTVRTDIQLDKLIVSA 1188
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 78 TNDSDKKI-RSHQRTPSGSRDFKEATKRDALARLEVELEKLISTA 209
T++ DK + S G RDF +A R +++L+KLI +A
Sbjct: 1144 TSNDDKYVGTSAVELAQGLRDFTDAITEIVTVRTDIQLDKLIVSA 1188
>Z81136-5|CAB03460.2| 733|Caenorhabditis elegans Hypothetical
protein W02B8.4 protein.
Length = 733
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 383 WCTLSVVGVADCNNRLQL 330
WC ++V+ VADC+ L+L
Sbjct: 29 WCLIAVLFVADCHGELKL 46
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 27.1 bits (57), Expect = 8.8
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Frame = +3
Query: 54 LHKEMKPETNDSDKKI-RSHQRTPSGSRDFKEAT---KRDALARLEVELEKLISTAPE-- 215
L KE+ N SDKK+ +S P+ S K + + L +L V LEKL+++A
Sbjct: 780 LAKEVIVRKN-SDKKLNKSSTEDPNQSPPLKYSVQWLRVHLLLKLIVVLEKLMNSAIHGG 838
Query: 216 ------TRRPQLEKEFKGFRRSSADSWLNRV 290
T P ++F +S + WLNRV
Sbjct: 839 SSVFNLTEIPVSSRQFFTVNAASCEVWLNRV 869
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 27.1 bits (57), Expect = 8.8
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Frame = +3
Query: 54 LHKEMKPETNDSDKKI-RSHQRTPSGSRDFKEAT---KRDALARLEVELEKLISTAPE-- 215
L KE+ N SDKK+ +S P+ S K + + L +L V LEKL+++A
Sbjct: 780 LAKEVIVRKN-SDKKLNKSSTEDPNQSPPLKYSVQWLRVHLLLKLIVVLEKLMNSAIHGG 838
Query: 216 ------TRRPQLEKEFKGFRRSSADSWLNRV 290
T P ++F +S + WLNRV
Sbjct: 839 SSVFNLTEIPVSSRQFFTVNAASCEVWLNRV 869
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-mediated
mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 27.1 bits (57), Expect = 8.8
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Frame = +3
Query: 54 LHKEMKPETNDSDKKI-RSHQRTPSGSRDFKEAT---KRDALARLEVELEKLISTAPE-- 215
L KE+ N SDKK+ +S P+ S K + + L +L V LEKL+++A
Sbjct: 780 LAKEVIVRKN-SDKKLNKSSTEDPNQSPPLKYSVQWLRVHLLLKLIVVLEKLMNSAIHGG 838
Query: 216 ------TRRPQLEKEFKGFRRSSADSWLNRV 290
T P ++F +S + WLNRV
Sbjct: 839 SSVFNLTEIPVSSRQFFTVNAASCEVWLNRV 869
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,123,170
Number of Sequences: 27780
Number of extensions: 214545
Number of successful extensions: 658
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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