Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0992
(545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g23210.1 68416.m02926 basic helix-loop-helix (bHLH) family pr... 31 0.38
At1g15940.1 68414.m01913 expressed protein similar To androgen-i... 31 0.50
At5g35230.1 68418.m04177 hypothetical protein 31 0.66
At1g71360.1 68414.m08237 expressed protein low similarity to PIR... 30 0.88
At1g61040.1 68414.m06872 plus-3 domain-containing protein contai... 30 0.88
At1g01810.1 68414.m00100 hypothetical protein 29 1.5
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 2.7
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 28 3.5
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 28 3.5
At4g18570.1 68417.m02749 proline-rich family protein common fami... 28 3.5
At4g08210.1 68417.m01356 pentatricopeptide (PPR) repeat-containi... 28 3.5
At3g46850.1 68416.m05085 subtilase family protein contains simil... 28 3.5
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 28 4.7
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 27 6.2
At1g71820.1 68414.m08300 expressed protein 27 6.2
At5g67550.1 68418.m08518 expressed protein 27 8.2
At2g22140.1 68415.m02630 expressed protein ; expression supporte... 27 8.2
>At3g23210.1 68416.m02926 basic helix-loop-helix (bHLH) family
protein similar to hypothetical protein GB:CAB10220 from
[Arabidopsis thaliana]
Length = 320
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 218 GFRGRGDELLQLHLQSSEGITFGGLLEV 135
GFRG+ D+ HLQ +G F G++E+
Sbjct: 107 GFRGQNDDSAVPHLQQQQGQVFSGVVEI 134
>At1g15940.1 68414.m01913 expressed protein similar To
androgen-induced prostate proliferative shutoff
associated protein (GI:4559410) [Homo sapiens]
Length = 990
Score = 31.1 bits (67), Expect = 0.50
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 27 CYQSLLSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFK 143
C + H ++KP+ N++D+KI Q PS S + K
Sbjct: 256 CQSEFATTQAHNDVKPKDNEADEKISEGQVVPSDSLEDK 294
>At5g35230.1 68418.m04177 hypothetical protein
Length = 366
Score = 30.7 bits (66), Expect = 0.66
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 248 FELFLELRTPGFRGRGDELLQLHLQS-SEGITFGGLLEV 135
FEL L+L P F ELLQLHL + S+ I+ G L V
Sbjct: 145 FEL-LDLSQPNFNNLSQELLQLHLMADSKDISLKGWLSV 182
>At1g71360.1 68414.m08237 expressed protein low similarity to
PIR|JC7185 chromosome 1 C1orf9 protein [Homo sapiens]
Length = 459
Score = 30.3 bits (65), Expect = 0.88
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Frame = +3
Query: 33 QSLLSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDAL------ARLEVELEK 194
+SL ++ KEM E + +K++ + + G ++ +E TK++A+ R+E ELEK
Sbjct: 323 RSLKYGMIFKEMDLEASKREKEVETMRLEVEGMKEREENTKKEAMEMRKWRMRVETELEK 382
>At1g61040.1 68414.m06872 plus-3 domain-containing protein contains
Pfam profile PF03126: Plus-3 domain
Length = 643
Score = 30.3 bits (65), Expect = 0.88
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 42 LSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALA 170
L+ L K MK + + +K+R + SGSRDF +TKR LA
Sbjct: 183 LNELRAKRMKQQDPAALRKLRDASKGGSGSRDF-SSTKRKPLA 224
>At1g01810.1 68414.m00100 hypothetical protein
Length = 160
Score = 29.5 bits (63), Expect = 1.5
Identities = 26/91 (28%), Positives = 42/91 (46%)
Frame = +3
Query: 93 KKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFRRSSAD 272
+K +SH+R + RD K+ K+D+ ++ +I T PET +L + F F +S
Sbjct: 62 RKEKSHRRRETRKRDKKKKKKKDSNNNTKL----VIGTKPET-DAELRRWFSYFDKSFKL 116
Query: 273 SWLNRVRR*HGRKSRSXXKEL*SIITVCHAN 365
S +V+ RK K L +C N
Sbjct: 117 SLPRKVKLTSPRKLNDHNKNL-KEAPICELN 146
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 84 DSDKKIRSHQRTPSGSRDFK--EATKRDALARLEVELEKLISTAPETR-RPQLEK 239
D+ +K+R + + K EA KRDA +RLEV L + AP R P+ EK
Sbjct: 572 DNREKVRKAEEAAAREEQIKREEARKRDAESRLEV-LRNVRGLAPLKRASPEAEK 625
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 63 EMKPETNDSDKKIRSHQRTPS---GSRDFKEATKRDALARLEVELEKLISTAPE 215
E + N SD + +PS GS+ +KE DA+ R + + +ST P+
Sbjct: 459 EKQAVVNMSDSHPKKGSSSPSRSFGSKPYKEVPSHDAIQRRRPDTYEEVSTGPD 512
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 63 EMKPETNDSDKKIRSHQRTPS---GSRDFKEATKRDALARLEVELEKLISTAPE 215
E + N SD + +PS GS+ +KE DA+ R + + +ST P+
Sbjct: 459 EKQAVVNMSDSHPKKGSSSPSRSFGSKPYKEVPSHDAIQRRRPDTYEEVSTGPD 512
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +3
Query: 54 LHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQL 233
L KE D+++ R R+ R+ E +++ A + VEL KL+S+ + +
Sbjct: 138 LRKETARLAEDNERLRREFDRSEEMRREC-ETREKEMEAEI-VELRKLVSSESDDHALSV 195
Query: 234 EKEFKGFRRSSADSWLNR 287
+ F+G SA S L R
Sbjct: 196 SQRFQGLMDVSAKSNLIR 213
>At4g08210.1 68417.m01356 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 686
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 364 LAWQTVIIDYSSXXKLLDFLPCYRRTLFSQESAEERLKPLNSFSSCG 224
+ W T++ Y+S K + YRR L S+E A +CG
Sbjct: 72 VTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACG 118
>At3g46850.1 68416.m05085 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 736
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 185 LHLQSSEGITFGGLLEVTRP*RRPLVTANLFIGVV 81
L+LQ++ F GL E R R PL+ ++ IGV+
Sbjct: 108 LNLQTTTSWNFMGLKEGKRTKRNPLIESDTIIGVI 142
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +3
Query: 18 CLCCYQSLLSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKL 197
C CC Q L + L+ + R +T S F+EA +R ++ E++ L
Sbjct: 86 CPCCSQHLTNNQLYPNFLLDKLLKKTSARHVSKTASPLDQFREALQRGCDVSIK-EVDNL 144
Query: 198 ISTAPETRRPQLEKE 242
++ E +R ++E
Sbjct: 145 LTLLAERKRKMEQEE 159
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -3
Query: 123 TASAGDCESFYRSRWFL----ASFLYVITEITSFDNNTNTVSL 7
T+S+ C +F S +L AS + + IT+FD+ TNT+ L
Sbjct: 526 TSSSSSCYTFIPSPSYLTPPAASLMIIEVLITAFDHATNTMHL 568
>At1g71820.1 68414.m08300 expressed protein
Length = 752
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 224 SAARERVQRLQTLFSRFLAEQGPSVTWEKIEKLXXGAVIDYYSLPRQ 364
+AA E V RL+ F + TWE EK G V +YY L ++
Sbjct: 160 AAAGEEVGRLREYF------EDVDRTWETFEKTLWGHVSNYYKLSKE 200
>At5g67550.1 68418.m08518 expressed protein
Length = 439
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 406 PPPTCXAYGARCPSLAWQTVIIDYSSXXKLLDFLPCYR 293
PP TC G P A+ V +S +LD LP ++
Sbjct: 324 PPETCRITGKFIPEAAYLKVYAYSNSAQGMLDILPSFQ 361
>At2g22140.1 68415.m02630 expressed protein ; expression supported
by MPSS
Length = 506
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 129 SRDFKEATKRDALARLEVE-LEKLISTAPETRRPQLEKEFKGFRR 260
S++ K + + R E E LEK S A E R +LEKE K + +
Sbjct: 187 SKEDKTSAMEEKKLRKEQERLEKAASKAEEAERKRLEKEKKKWEK 231
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,705,358
Number of Sequences: 28952
Number of extensions: 206795
Number of successful extensions: 678
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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