Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0985
         (520 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8MRQ4 Cluster: LMBR1 domain-containing protein 2 homol...    33   3.9  
UniRef50_UPI0000499FB2 Cluster: hypothetical protein 47.t00023; ...    32   9.0  
UniRef50_A2FTD8 Cluster: Putative uncharacterized protein; n=1; ...    32   9.0  

>UniRef50_Q8MRQ4 Cluster: LMBR1 domain-containing protein 2 homolog;
           n=6; Endopterygota|Rep: LMBR1 domain-containing protein
           2 homolog - Drosophila melanogaster (Fruit fly)
          Length = 694

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 13  YCTNRNVSRNRFL*ATFIYKHYSTNVKRLVFGRVALC 123
           YCT   + R RFL   ++  H+ TN   L+F  + LC
Sbjct: 440 YCTYSTILRIRFLNLYYLAPHHQTNEHSLIFSGMLLC 476


>UniRef50_UPI0000499FB2 Cluster: hypothetical protein 47.t00023;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 47.t00023 - Entamoeba histolytica HM-1:IMSS
          Length = 1615

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +1

Query: 13  YCTNRNVSRNRFL*ATFIYKHYSTNVKRLV----FGRVALCLRVYIEIVRCYRYTRGVLP 180
           YC N N++ +  L  T       T +K+++    FG     +++   +++ Y     +LP
Sbjct: 780 YCNNTNLTPSNILIETLFNITKKTVIKKIIYNKYFGSYLSKMKINKCVMKTYLLLIKLLP 839

Query: 181 YTKEHIIKVY 210
           +++E ++KVY
Sbjct: 840 HSQEQLLKVY 849


>UniRef50_A2FTD8 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 517

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 253 TNYHG-VIPCRIARTTVSVYLFN*DSIIILLWFMSVYXIFTHVYYTTFKIF 402
           TN H  +I C +++ T  +  F  DSI++L++ +S+Y ++     T+F+ +
Sbjct: 243 TNAHSYMISCGLSKLTYWIGNFLIDSILLLIFSISIYILYISFGVTSFRTY 293


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,904,895
Number of Sequences: 1657284
Number of extensions: 8292353
Number of successful extensions: 14318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14313
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)