Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0985
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   2.9  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   5.1  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   5.1  

>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  IYKHYSTNVKRLVFGRVALCLRVYIEIVRCYRY 162
           +Y  Y  ++ +   GR++ C  +++ +   YRY
Sbjct: 181 VYLFYDPDMSKFSLGRISACREIWLALECGYRY 213


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 260  TTASFLAGLPEPLFLFTYLIKIPLLFYYGLCPYXIYL 370
            TT+SFL  +P+ +FL T   ++P +F     PY  YL
Sbjct: 1557 TTSSFLDKVPDGIFLKT--SRLP-IFEANKAPYNAYL 1590


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 317 IKIPLLFYYGLCPYXIYLHMYTIQ 388
           +K+  L YY  CP+    H YT Q
Sbjct: 29  LKLCKLKYYNFCPFYNIQHNYTCQ 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,323
Number of Sequences: 5004
Number of extensions: 38611
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)