Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0985
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0319 - 8917042-8917122,8917628-8917680,8917754-8917800,891...    31   0.55 
09_06_0131 - 21037698-21038210,21038293-21038532,21038679-210387...    28   5.2  
08_02_1505 - 27581466-27581978,27582054-27582293,27582527-275826...    28   5.2  
08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713...    28   5.2  
02_04_0634 - 24644140-24644778                                         27   9.0  

>02_02_0319 -
           8917042-8917122,8917628-8917680,8917754-8917800,
           8917901-8917992,8919725-8920060,8920370-8920423,
           8920547-8920879,8921133-8921207,8921293-8921441,
           8922411-8922429
          Length = 412

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 123 LKSVHRNSEMLSVYTWCFTIHKGTHN*GIRMLSVLTRHG 239
           L S+H N   +S Y  CF +H+       RM+ +L RHG
Sbjct: 151 LGSMHANPNCMSPYG-CFPLHEAAERCSPRMIRLLFRHG 188


>09_06_0131 -
           21037698-21038210,21038293-21038532,21038679-21038789,
           21038872-21038926,21039074-21039210,21039284-21039421,
           21040304-21040494,21040625-21040703
          Length = 487

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 76  YSTNVKRLVFG-RVALCLRVYIEIVRCYRY 162
           YSTN  ++ F  R+A CL ++ E V+  R+
Sbjct: 422 YSTNEPQIAFNSRIAFCLNMHNEAVKALRF 451


>08_02_1505 -
           27581466-27581978,27582054-27582293,27582527-27582637,
           27582732-27582786,27582880-27583016,27583092-27583229,
           27583293-27583355,27584379-27584569,27584657-27584732
          Length = 507

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 76  YSTNVKRLVFG-RVALCLRVYIEIVRCYRY 162
           YSTN  ++ F  R+A CL ++ E V+  R+
Sbjct: 442 YSTNEPQIAFNSRIAFCLNMHNEAVKAMRF 471


>08_02_1328 +
           26170248-26170493,26170702-26170798,26171325-26171342,
           26171566-26171666,26173486-26173562,26173736-26173802,
           26176467-26176577,26176652-26176749,26176834-26176903
          Length = 294

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 269 SFLAGLPEPL-FLFTYLIKIPLLFY 340
           ++L  LPEP  F+FT+   +PL+F+
Sbjct: 198 TYLLELPEPFSFIFTWFAALPLIFW 222


>02_04_0634 - 24644140-24644778
          Length = 212

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 283 SCKE*RRGNLFIVSTPCLVSTLNMRIP 203
           SCK  R G+   + TPC VS++++ +P
Sbjct: 172 SCKARRVGDAAALGTPCDVSSMDIPVP 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,237,312
Number of Sequences: 37544
Number of extensions: 206447
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)